Variant report

Variant	rs6999874
Chromosome Location	chr8:49671763-49671764
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49670019..49671921-chr8:49828868..49831772,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10087585	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10087909	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10088320	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10088848	1.00[EUR][1000 genomes]
rs10091785	1.00[EUR][1000 genomes]
rs10093573	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10095974	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096121	1.00[CHB][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096124	1.00[CHB][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103620	0.85[AMR][1000 genomes]
rs10109962	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113231	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10113574	1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes]
rs12334368	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12676888	1.00[CHB][hapmap]
rs12679730	0.90[ASN][1000 genomes]
rs16938569	0.80[AMR][1000 genomes]
rs16938608	0.85[AMR][1000 genomes]
rs16938671	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938732	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938733	1.00[CHB][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938743	1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938987	1.00[EUR][1000 genomes]
rs16938995	1.00[EUR][1000 genomes]
rs16939033	1.00[EUR][1000 genomes]
rs16939049	1.00[EUR][1000 genomes]
rs2062114	1.00[CHB][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376220	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478726	1.00[EUR][1000 genomes]
rs28489723	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489784	0.85[AMR][1000 genomes]
rs28498051	0.80[AMR][1000 genomes]
rs28506917	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes]
rs28537094	1.00[EUR][1000 genomes]
rs28549334	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615528	1.00[EUR][1000 genomes]
rs28620405	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28636874	1.00[EUR][1000 genomes]
rs28790665	0.90[AMR][1000 genomes]
rs28810807	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56712301	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58148301	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59367437	1.00[EUR][1000 genomes]
rs6472028	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472029	1.00[CHB][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472030	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472036	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982290	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982783	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989173	1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003481	1.00[CHB][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007772	1.00[CHB][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007937	0.85[AMR][1000 genomes]
rs7011713	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575632	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575652	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575695	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575698	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577412	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73577428	1.00[EUR][1000 genomes]
rs73577431	1.00[EUR][1000 genomes]
rs73577459	1.00[EUR][1000 genomes]
rs73577461	1.00[EUR][1000 genomes]
rs73577462	1.00[EUR][1000 genomes]
rs73577463	1.00[EUR][1000 genomes]
rs73577464	1.00[EUR][1000 genomes]
rs73680733	1.00[EUR][1000 genomes]
rs7460794	1.00[EUR][1000 genomes]
rs7838382	1.00[CHB][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840259	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922803	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975744	1.00[CHB][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9773582	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9886604	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49668400-49672000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49669400-49675000	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:49670000-49671800	Enhancers	Fetal Lung	lung
4	chr8:49670400-49675600	Weak transcription	Placenta	Placenta
5	chr8:49670600-49675800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:49670600-49675800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:49670800-49675600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:49670800-49675800	Weak transcription	Fetal Intestine Small	intestine
9	chr8:49670800-49676400	Weak transcription	HSMMtube	muscle
10	chr8:49671000-49675600	Weak transcription	Osteobl	bone
11	chr8:49671200-49672800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:49671200-49675000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:49671200-49675600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:49671200-49675600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:49671200-49675600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:49671200-49675600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:49671200-49675600	Weak transcription	NHEK	skin
18	chr8:49671200-49675800	Weak transcription	NHDF-Ad	bronchial
19	chr8:49671400-49672600	Weak transcription	Spleen	Spleen
20	chr8:49671400-49675000	Weak transcription	Ovary	ovary
21	chr8:49671400-49675400	Weak transcription	Fetal Stomach	stomach
22	chr8:49671400-49675600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:49671400-49675600	Weak transcription	Adipose Nuclei	Adipose
24	chr8:49671400-49675600	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:49671400-49675600	Weak transcription	Pancreas	Pancrea
26	chr8:49671400-49675800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:49671400-49675800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:49671400-49675800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr8:49671400-49675800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr8:49671400-49675800	Weak transcription	NHLF	lung
31	chr8:49671400-49676000	Weak transcription	HMEC	breast
32	chr8:49671400-49676200	Weak transcription	Fetal Kidney	kidney
33	chr8:49671400-49676800	Weak transcription	Right Atrium	heart
34	chr8:49671400-49677000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:49671400-49677400	Weak transcription	Lung	lung
36	chr8:49671600-49675400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr8:49671600-49675600	Weak transcription	Duodenum Mucosa	Duodenum

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