Variant report

Variant	rs7007772
Chromosome Location	chr8:49678670-49678671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49678177..49680630-chr8:49701086..49703222,2	MCF-7	breast:
2	chr8:49668472..49670185-chr8:49677842..49679700,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10087585	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10087909	1.00[CHB][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10088320	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10088848	1.00[EUR][1000 genomes]
rs10091785	1.00[EUR][1000 genomes]
rs10093573	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10095974	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096121	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096124	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103620	0.84[AMR][1000 genomes]
rs10109962	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113231	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10113574	1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes]
rs12334368	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12676888	1.00[CHB][hapmap]
rs12679730	0.90[ASN][1000 genomes]
rs16938569	0.89[AMR][1000 genomes]
rs16938608	0.84[AMR][1000 genomes]
rs16938671	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938732	1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938733	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938743	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938987	1.00[EUR][1000 genomes]
rs16938995	1.00[EUR][1000 genomes]
rs16939033	1.00[EUR][1000 genomes]
rs16939049	1.00[EUR][1000 genomes]
rs2062114	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376220	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478726	1.00[EUR][1000 genomes]
rs28489723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489784	0.84[AMR][1000 genomes]
rs28498051	0.89[AMR][1000 genomes]
rs28506917	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes]
rs28537094	1.00[EUR][1000 genomes]
rs28549334	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615528	1.00[EUR][1000 genomes]
rs28620405	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28636874	1.00[EUR][1000 genomes]
rs28790665	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28810807	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56712301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58148301	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59367437	1.00[EUR][1000 genomes]
rs6472028	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472029	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472030	1.00[CHB][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472036	1.00[CHB][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982290	1.00[CHB][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982783	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989173	1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999874	1.00[CHB][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003481	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007937	0.84[AMR][1000 genomes]
rs7011713	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575632	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575652	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575695	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575698	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577412	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73577428	1.00[EUR][1000 genomes]
rs73577431	1.00[EUR][1000 genomes]
rs73577459	1.00[EUR][1000 genomes]
rs73577461	1.00[EUR][1000 genomes]
rs73577462	1.00[EUR][1000 genomes]
rs73577463	1.00[EUR][1000 genomes]
rs73577464	1.00[EUR][1000 genomes]
rs73680733	1.00[EUR][1000 genomes]
rs7460794	1.00[EUR][1000 genomes]
rs7838382	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840259	1.00[CHB][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922803	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975744	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9773582	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9886604	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49675200-49679600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49675600-49678800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:49677600-49690800	Weak transcription	Fetal Lung	lung
4	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:49677800-49678800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:49677800-49679000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:49678000-49679200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:49678000-49686000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links