Variant report

Variant	rs9773582
Chromosome Location	chr8:49668964-49668965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49668073..49669071-chr8:49837841..49838748,4	MCF-7	breast:
2	chr8:49668472..49670185-chr8:49677842..49679700,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf22-13	chr8:49666484-49669734	NONHSAT126497

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10087585	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10087909	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10088320	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs10088848	1.00[EUR][1000 genomes]
rs10091785	1.00[EUR][1000 genomes]
rs10093573	1.00[EUR][1000 genomes]
rs10095974	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096121	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096124	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10103620	0.94[AMR][1000 genomes]
rs10109962	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113231	1.00[EUR][1000 genomes]
rs10113574	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334368	1.00[EUR][1000 genomes]
rs16938569	0.89[AMR][1000 genomes]
rs16938608	0.94[AMR][1000 genomes]
rs16938671	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938732	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938733	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938743	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938987	1.00[EUR][1000 genomes]
rs16938995	1.00[EUR][1000 genomes]
rs16939033	1.00[EUR][1000 genomes]
rs16939049	1.00[EUR][1000 genomes]
rs2062114	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28376220	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28478726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489723	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28489784	0.94[AMR][1000 genomes]
rs28498051	0.89[AMR][1000 genomes]
rs28506917	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes]
rs28537094	1.00[EUR][1000 genomes]
rs28549334	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28615528	1.00[EUR][1000 genomes]
rs28620405	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28636874	1.00[EUR][1000 genomes]
rs28790665	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28810807	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56712301	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58148301	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59367437	1.00[EUR][1000 genomes]
rs6472028	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472029	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472030	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472036	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6982290	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6982783	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989173	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999874	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003481	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7007772	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7007937	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7011713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575632	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575652	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575695	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575698	1.00[EUR][1000 genomes]
rs73575700	1.00[EUR][1000 genomes]
rs73577412	1.00[EUR][1000 genomes]
rs73577428	1.00[EUR][1000 genomes]
rs73577431	1.00[EUR][1000 genomes]
rs73577459	1.00[EUR][1000 genomes]
rs73577461	1.00[EUR][1000 genomes]
rs73577462	1.00[EUR][1000 genomes]
rs73577463	1.00[EUR][1000 genomes]
rs73577464	1.00[EUR][1000 genomes]
rs73680733	1.00[EUR][1000 genomes]
rs7460794	1.00[EUR][1000 genomes]
rs7838382	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840259	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs922803	1.00[EUR][1000 genomes]
rs975744	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9886604	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761425	chr8:49658066-49669601	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49663600-49669600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:49664400-49669000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:49664800-49669400	Weak transcription	Spleen	Spleen
4	chr8:49665600-49669400	Weak transcription	Lung	lung
5	chr8:49666400-49669400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:49666400-49670000	Weak transcription	Osteobl	bone
7	chr8:49666400-49670200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:49666400-49670600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:49666600-49669200	Weak transcription	HMEC	breast
10	chr8:49666600-49669800	Weak transcription	NHDF-Ad	bronchial
11	chr8:49666600-49670000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:49666600-49670000	Weak transcription	NHEK	skin
13	chr8:49666800-49669400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:49666800-49671400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:49667200-49670000	Weak transcription	Fetal Lung	lung
16	chr8:49668200-49671400	Enhancers	Pancreas	Pancrea
17	chr8:49668400-49672000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:49668600-49670800	Enhancers	Fetal Muscle Trunk	muscle
19	chr8:49668800-49671400	Enhancers	Ovary	ovary

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