Variant report

Variant	rs28478726
Chromosome Location	chr8:49638225-49638226
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10087585	1.00[EUR][1000 genomes]
rs10087909	1.00[EUR][1000 genomes]
rs10088848	1.00[EUR][1000 genomes]
rs10091785	1.00[EUR][1000 genomes]
rs10093573	1.00[EUR][1000 genomes]
rs10095974	1.00[EUR][1000 genomes]
rs10096121	1.00[EUR][1000 genomes]
rs10096124	1.00[EUR][1000 genomes]
rs10103620	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10109962	1.00[EUR][1000 genomes]
rs10110011	0.85[AFR][1000 genomes]
rs10113231	1.00[EUR][1000 genomes]
rs10113574	1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334368	1.00[EUR][1000 genomes]
rs16938569	0.86[AFR][1000 genomes]
rs16938608	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16938671	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938732	1.00[EUR][1000 genomes]
rs16938733	1.00[EUR][1000 genomes]
rs16938743	1.00[EUR][1000 genomes]
rs16938987	1.00[EUR][1000 genomes]
rs16938995	1.00[EUR][1000 genomes]
rs16939033	1.00[EUR][1000 genomes]
rs16939049	1.00[EUR][1000 genomes]
rs2062114	1.00[EUR][1000 genomes]
rs28376220	1.00[EUR][1000 genomes]
rs28489723	1.00[EUR][1000 genomes]
rs28489784	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28498051	0.87[AFR][1000 genomes]
rs28506917	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes]
rs28537094	1.00[EUR][1000 genomes]
rs28549334	1.00[EUR][1000 genomes]
rs28615528	1.00[EUR][1000 genomes]
rs28620405	1.00[EUR][1000 genomes]
rs28636874	1.00[EUR][1000 genomes]
rs28790665	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28810807	1.00[EUR][1000 genomes]
rs56712301	1.00[EUR][1000 genomes]
rs58148301	1.00[EUR][1000 genomes]
rs59367437	1.00[EUR][1000 genomes]
rs6472028	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6472029	1.00[EUR][1000 genomes]
rs6472030	1.00[EUR][1000 genomes]
rs6472036	1.00[EUR][1000 genomes]
rs6982290	1.00[EUR][1000 genomes]
rs6982783	1.00[EUR][1000 genomes]
rs6989173	1.00[EUR][1000 genomes]
rs6999874	1.00[EUR][1000 genomes]
rs7003481	1.00[EUR][1000 genomes]
rs7007772	1.00[EUR][1000 genomes]
rs7007937	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7011713	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575632	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575652	1.00[EUR][1000 genomes]
rs73575695	1.00[EUR][1000 genomes]
rs73575698	1.00[EUR][1000 genomes]
rs73575700	1.00[EUR][1000 genomes]
rs73577412	1.00[EUR][1000 genomes]
rs73577428	1.00[EUR][1000 genomes]
rs73577431	1.00[EUR][1000 genomes]
rs73577459	1.00[EUR][1000 genomes]
rs73577461	1.00[EUR][1000 genomes]
rs73577462	1.00[EUR][1000 genomes]
rs73577463	1.00[EUR][1000 genomes]
rs73577464	1.00[EUR][1000 genomes]
rs73680733	1.00[EUR][1000 genomes]
rs7460794	1.00[EUR][1000 genomes]
rs7838382	1.00[EUR][1000 genomes]
rs7840259	1.00[EUR][1000 genomes]
rs922803	1.00[EUR][1000 genomes]
rs975744	1.00[EUR][1000 genomes]
rs9773582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886604	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3323191	chr8:49636899-49641497	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49627000-49647200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:49627800-49647400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:49633200-49647200	Weak transcription	Ovary	ovary
4	chr8:49633600-49638800	Weak transcription	Fetal Lung	lung
5	chr8:49637800-49640000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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