Variant report

Variant	rs56712301
Chromosome Location	chr8:49704154-49704155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49694708..49697435-chr8:49704058..49706751,2	MCF-7	breast:
2	chr8:49701574..49703321-chr8:49703503..49705202,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10087585	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10087909	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10088320	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10088848	1.00[EUR][1000 genomes]
rs10091785	1.00[EUR][1000 genomes]
rs10093573	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10095974	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096121	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096124	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103620	0.84[AMR][1000 genomes]
rs10109962	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113231	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10113574	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes]
rs12334368	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12679730	0.90[ASN][1000 genomes]
rs16938569	0.89[AMR][1000 genomes]
rs16938608	0.84[AMR][1000 genomes]
rs16938671	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938732	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938733	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938743	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938987	1.00[EUR][1000 genomes]
rs16938995	1.00[EUR][1000 genomes]
rs16939033	1.00[EUR][1000 genomes]
rs16939049	1.00[EUR][1000 genomes]
rs2062114	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478726	1.00[EUR][1000 genomes]
rs28489723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489784	0.84[AMR][1000 genomes]
rs28498051	0.89[AMR][1000 genomes]
rs28506917	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes]
rs28537094	1.00[EUR][1000 genomes]
rs28549334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615528	1.00[EUR][1000 genomes]
rs28620405	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28636874	1.00[EUR][1000 genomes]
rs28790665	0.89[AMR][1000 genomes]
rs28810807	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58148301	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59367437	1.00[EUR][1000 genomes]
rs6472028	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472029	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472030	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472036	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982783	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989173	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999874	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003481	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007772	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007937	0.84[AMR][1000 genomes]
rs7011713	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575632	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575652	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575698	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577412	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73577428	1.00[EUR][1000 genomes]
rs73577431	1.00[EUR][1000 genomes]
rs73577459	1.00[EUR][1000 genomes]
rs73577461	1.00[EUR][1000 genomes]
rs73577462	1.00[EUR][1000 genomes]
rs73577463	1.00[EUR][1000 genomes]
rs73577464	1.00[EUR][1000 genomes]
rs73680733	1.00[EUR][1000 genomes]
rs7460794	1.00[EUR][1000 genomes]
rs7838382	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840259	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922803	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975744	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9773582	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9886604	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49691200-49705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:49699000-49705600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr8:49699400-49705600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:49700600-49705200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:49701600-49704200	Weak transcription	Fetal Kidney	kidney
6	chr8:49701800-49704600	Weak transcription	Ovary	ovary
7	chr8:49701800-49704800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:49701800-49704800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:49701800-49705000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:49701800-49705400	Weak transcription	Left Ventricle	heart
11	chr8:49701800-49705600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:49702000-49704200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:49702000-49705600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:49702200-49705000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr8:49702200-49705200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr8:49702200-49705400	Weak transcription	HUVEC	blood vessel
17	chr8:49702400-49704400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:49702400-49704600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:49703000-49704600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr8:49703000-49705400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr8:49703000-49716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:49703400-49704600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:49703400-49705600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr8:49703600-49704400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr8:49703800-49704200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:49703800-49704600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:49703800-49704800	Enhancers	Fetal Lung	lung
28	chr8:49703800-49705200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr8:49703800-49705400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:49703800-49706000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:49704000-49704400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr8:49704000-49704800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:49704000-49705200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:49704000-49705600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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