Variant report

Variant	rs16939049
Chromosome Location	chr8:49814230-49814231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10087585	1.00[EUR][1000 genomes]
rs10087909	0.89[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10088848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10091785	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093573	1.00[EUR][1000 genomes]
rs10095974	1.00[EUR][1000 genomes]
rs10096121	1.00[EUR][1000 genomes]
rs10096124	1.00[EUR][1000 genomes]
rs10109962	1.00[EUR][1000 genomes]
rs10113231	1.00[EUR][1000 genomes]
rs10113574	1.00[EUR][1000 genomes]
rs10504067	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11987212	1.00[AMR][1000 genomes]
rs12334368	1.00[EUR][1000 genomes]
rs16938671	1.00[EUR][1000 genomes]
rs16938732	1.00[EUR][1000 genomes]
rs16938733	1.00[EUR][1000 genomes]
rs16938743	0.88[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16938987	1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16938995	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16939033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16939100	1.00[AMR][1000 genomes]
rs2062114	1.00[EUR][1000 genomes]
rs28376220	1.00[EUR][1000 genomes]
rs28478726	1.00[EUR][1000 genomes]
rs28489723	1.00[EUR][1000 genomes]
rs28506917	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28537094	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28549334	1.00[EUR][1000 genomes]
rs28615528	1.00[EUR][1000 genomes]
rs28620405	1.00[EUR][1000 genomes]
rs28636874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28668860	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28750315	0.85[AMR][1000 genomes]
rs28776510	0.85[AMR][1000 genomes]
rs28810807	1.00[EUR][1000 genomes]
rs28836871	0.85[AMR][1000 genomes]
rs56255608	1.00[AMR][1000 genomes]
rs56712301	1.00[EUR][1000 genomes]
rs58148301	1.00[EUR][1000 genomes]
rs59367437	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6472028	1.00[EUR][1000 genomes]
rs6472029	1.00[EUR][1000 genomes]
rs6472030	0.89[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6472036	0.89[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6982290	1.00[EUR][1000 genomes]
rs6982783	1.00[EUR][1000 genomes]
rs6989173	0.89[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6999874	1.00[EUR][1000 genomes]
rs7003481	1.00[EUR][1000 genomes]
rs7007772	1.00[EUR][1000 genomes]
rs7011713	1.00[EUR][1000 genomes]
rs73575632	1.00[EUR][1000 genomes]
rs73575652	1.00[EUR][1000 genomes]
rs73575695	1.00[EUR][1000 genomes]
rs73575698	1.00[EUR][1000 genomes]
rs73575700	1.00[EUR][1000 genomes]
rs73577412	1.00[EUR][1000 genomes]
rs73577428	1.00[EUR][1000 genomes]
rs73577431	1.00[EUR][1000 genomes]
rs73577459	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73577461	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73577462	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73577463	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73577464	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73680733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680742	0.85[AMR][1000 genomes]
rs73680744	0.85[AMR][1000 genomes]
rs73680746	0.85[AMR][1000 genomes]
rs7460794	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7827154	1.00[MEX][hapmap]
rs7838382	1.00[EUR][1000 genomes]
rs7840259	1.00[EUR][1000 genomes]
rs922803	1.00[EUR][1000 genomes]
rs975744	1.00[EUR][1000 genomes]
rs9773582	1.00[EUR][1000 genomes]
rs9886604	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49802000-49814800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:49808800-49818600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:49809400-49817800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:49809800-49814800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:49810000-49814800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:49811400-49815400	Enhancers	NH-A	brain
7	chr8:49811600-49822000	Weak transcription	Fetal Kidney	kidney
8	chr8:49812000-49814800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:49812400-49814800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:49812400-49814800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:49812400-49814800	Weak transcription	HMEC	breast
12	chr8:49812600-49814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:49812600-49814600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:49812600-49814800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:49812600-49814800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:49812600-49814800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:49812600-49814800	Weak transcription	Ovary	ovary
18	chr8:49812600-49814800	Weak transcription	HSMMtube	muscle
19	chr8:49812600-49815000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:49812800-49814600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:49812800-49814800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:49812800-49814800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:49812800-49814800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:49812800-49814800	Weak transcription	Fetal Stomach	stomach
25	chr8:49812800-49814800	Weak transcription	NHDF-Ad	bronchial
26	chr8:49812800-49814800	Weak transcription	NHLF	lung
27	chr8:49812800-49815400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:49812800-49815800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr8:49813000-49814400	Weak transcription	HSMM	muscle
30	chr8:49813000-49815200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:49813400-49818200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:49814000-49815800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:49814200-49815600	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links