Variant report

Variant	rs10088848
Chromosome Location	chr8:49798656-49798657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49795847..49799230-chr8:49800890..49804060,3	K562	blood:
2	chr8:49778159..49780891-chr8:49797440..49799639,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10087585	1.00[EUR][1000 genomes]
rs10087909	1.00[EUR][1000 genomes]
rs10091785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10093573	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10095974	1.00[EUR][1000 genomes]
rs10096121	1.00[EUR][1000 genomes]
rs10096124	1.00[EUR][1000 genomes]
rs10109962	1.00[EUR][1000 genomes]
rs10113231	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10113574	1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes]
rs11987212	1.00[AMR][1000 genomes]
rs12334368	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12679730	0.82[ASN][1000 genomes]
rs16938671	1.00[EUR][1000 genomes]
rs16938732	1.00[EUR][1000 genomes]
rs16938733	1.00[EUR][1000 genomes]
rs16938743	1.00[EUR][1000 genomes]
rs16938987	1.00[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16939033	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16939049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16939100	1.00[AMR][1000 genomes]
rs2062114	1.00[EUR][1000 genomes]
rs28376220	1.00[EUR][1000 genomes]
rs28478726	1.00[EUR][1000 genomes]
rs28489723	1.00[EUR][1000 genomes]
rs28506917	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28537094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28549334	1.00[EUR][1000 genomes]
rs28615528	1.00[EUR][1000 genomes]
rs28620405	1.00[EUR][1000 genomes]
rs28636874	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668860	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28750315	0.85[AMR][1000 genomes]
rs28776510	0.85[AMR][1000 genomes]
rs28810807	1.00[EUR][1000 genomes]
rs28836871	0.85[AMR][1000 genomes]
rs56255608	1.00[AMR][1000 genomes]
rs56712301	1.00[EUR][1000 genomes]
rs58148301	1.00[EUR][1000 genomes]
rs59367437	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472028	1.00[EUR][1000 genomes]
rs6472029	1.00[EUR][1000 genomes]
rs6472030	1.00[EUR][1000 genomes]
rs6472036	1.00[EUR][1000 genomes]
rs6982290	1.00[EUR][1000 genomes]
rs6982783	1.00[EUR][1000 genomes]
rs6989173	1.00[EUR][1000 genomes]
rs6999874	1.00[EUR][1000 genomes]
rs7003481	1.00[EUR][1000 genomes]
rs7007772	1.00[EUR][1000 genomes]
rs7011713	1.00[EUR][1000 genomes]
rs73575632	1.00[EUR][1000 genomes]
rs73575652	1.00[EUR][1000 genomes]
rs73575695	1.00[EUR][1000 genomes]
rs73575698	1.00[EUR][1000 genomes]
rs73575700	1.00[EUR][1000 genomes]
rs73577412	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577428	1.00[EUR][1000 genomes]
rs73577431	1.00[EUR][1000 genomes]
rs73577459	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577461	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577462	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577463	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577464	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73680742	0.85[AMR][1000 genomes]
rs73680744	0.85[AMR][1000 genomes]
rs73680746	0.85[AMR][1000 genomes]
rs7460794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838382	1.00[EUR][1000 genomes]
rs7840259	1.00[EUR][1000 genomes]
rs922803	1.00[EUR][1000 genomes]
rs975744	1.00[EUR][1000 genomes]
rs9773582	1.00[EUR][1000 genomes]
rs9886604	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49791600-49800600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:49793400-49802800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:49796200-49799200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:49798000-49800600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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