Variant report

Variant	rs73577459
Chromosome Location	chr8:49773064-49773065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10087585	1.00[EUR][1000 genomes]
rs10087909	1.00[EUR][1000 genomes]
rs10088848	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091785	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10093573	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10095974	1.00[EUR][1000 genomes]
rs10096121	1.00[EUR][1000 genomes]
rs10096124	1.00[EUR][1000 genomes]
rs10109962	1.00[EUR][1000 genomes]
rs10113231	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10113574	1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes]
rs11987212	0.85[AMR][1000 genomes]
rs12334368	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12679730	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16938671	1.00[EUR][1000 genomes]
rs16938732	1.00[EUR][1000 genomes]
rs16938733	1.00[EUR][1000 genomes]
rs16938743	1.00[EUR][1000 genomes]
rs16938987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16939033	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16939049	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16939100	0.85[AMR][1000 genomes]
rs2062114	1.00[EUR][1000 genomes]
rs28376220	1.00[EUR][1000 genomes]
rs28478726	1.00[EUR][1000 genomes]
rs28489723	1.00[EUR][1000 genomes]
rs28506917	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28537094	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28549334	1.00[EUR][1000 genomes]
rs28615528	1.00[EUR][1000 genomes]
rs28620405	1.00[EUR][1000 genomes]
rs28636874	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668860	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28750315	1.00[AMR][1000 genomes]
rs28776510	1.00[AMR][1000 genomes]
rs28810807	1.00[EUR][1000 genomes]
rs28836871	1.00[AMR][1000 genomes]
rs56255608	0.85[AMR][1000 genomes]
rs56712301	1.00[EUR][1000 genomes]
rs58148301	1.00[EUR][1000 genomes]
rs59367437	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472028	1.00[EUR][1000 genomes]
rs6472029	1.00[EUR][1000 genomes]
rs6472030	1.00[EUR][1000 genomes]
rs6472036	1.00[EUR][1000 genomes]
rs6982290	1.00[EUR][1000 genomes]
rs6982783	1.00[EUR][1000 genomes]
rs6989173	1.00[EUR][1000 genomes]
rs6999256	0.84[AMR][1000 genomes]
rs6999874	1.00[EUR][1000 genomes]
rs7003481	1.00[EUR][1000 genomes]
rs7007772	1.00[EUR][1000 genomes]
rs7009872	0.85[AMR][1000 genomes]
rs7011713	1.00[EUR][1000 genomes]
rs73575632	1.00[EUR][1000 genomes]
rs73575652	1.00[EUR][1000 genomes]
rs73575695	1.00[EUR][1000 genomes]
rs73575698	1.00[EUR][1000 genomes]
rs73575700	1.00[EUR][1000 genomes]
rs73577412	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577428	1.00[EUR][1000 genomes]
rs73577431	1.00[EUR][1000 genomes]
rs73577461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577463	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680733	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73680742	1.00[AMR][1000 genomes]
rs73680744	1.00[AMR][1000 genomes]
rs73680746	1.00[AMR][1000 genomes]
rs7460794	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838382	1.00[EUR][1000 genomes]
rs7840259	1.00[EUR][1000 genomes]
rs922803	1.00[EUR][1000 genomes]
rs975744	1.00[EUR][1000 genomes]
rs9773582	1.00[EUR][1000 genomes]
rs9886604	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv528067	chr8:49769454-49779947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49765400-49776600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:49765600-49773600	Weak transcription	Fetal Brain Male	brain
3	chr8:49768200-49775200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:49771800-49776000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:49772000-49773600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:49772200-49773600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:49772400-49773200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:49772800-49773200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:49772800-49773400	Enhancers	Fetal Lung	lung
10	chr8:49772800-49775800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:49772800-49777000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:49773000-49774800	Weak transcription	Fetal Kidney	kidney
13	chr8:49773000-49775600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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