Variant report

Variant	rs9886604
Chromosome Location	chr8:49747888-49747889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49746979..49749701-chr8:49758776..49761273,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10087585	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10087909	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10088320	0.90[ASN][1000 genomes]
rs10088848	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10091785	1.00[EUR][1000 genomes]
rs10093573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095974	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10096121	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10096124	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10109962	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10113231	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113574	1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes]
rs12334368	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679730	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16938671	1.00[EUR][1000 genomes]
rs16938732	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16938733	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16938743	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16938987	1.00[CHB][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938995	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16939033	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16939049	1.00[EUR][1000 genomes]
rs2062114	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28376220	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28478726	1.00[EUR][1000 genomes]
rs28489723	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28506917	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513268	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28537094	1.00[EUR][1000 genomes]
rs28549334	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28615528	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28620405	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28636874	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28668860	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28750315	0.85[AMR][1000 genomes]
rs28776510	0.85[AMR][1000 genomes]
rs28810807	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28836871	0.85[AMR][1000 genomes]
rs56712301	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58148301	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59367437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6472028	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472029	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472030	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472036	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6982290	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6982783	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6989173	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6999256	0.84[AMR][1000 genomes]
rs6999874	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7003481	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7007772	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7009872	1.00[AMR][1000 genomes]
rs7011713	1.00[EUR][1000 genomes]
rs73575632	1.00[EUR][1000 genomes]
rs73575652	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73575695	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73575698	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73575700	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73577407	0.81[AMR][1000 genomes]
rs73577412	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577428	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577431	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577459	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577461	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577462	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577463	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577464	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73680733	1.00[EUR][1000 genomes]
rs73680742	0.85[AMR][1000 genomes]
rs73680744	0.85[AMR][1000 genomes]
rs73680746	0.85[AMR][1000 genomes]
rs7460794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7814104	0.92[AMR][1000 genomes]
rs7838382	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7840259	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs922803	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs975744	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9773582	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49734000-49748200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49746200-49751000	Weak transcription	Fetal Kidney	kidney
3	chr8:49746600-49748000	Weak transcription	Fetal Lung	lung
4	chr8:49746600-49748600	Enhancers	Fetal Muscle Trunk	muscle
5	chr8:49746800-49751000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:49746800-49751600	Weak transcription	Pancreas	Pancrea
7	chr8:49747000-49748000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:49747400-49748000	Enhancers	Esophagus	oesophagus
9	chr8:49747400-49748600	Enhancers	Spleen	Spleen
10	chr8:49747600-49748000	Enhancers	Brain Germinal Matrix	brain
11	chr8:49747600-49748600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:49747600-49748600	Enhancers	Fetal Muscle Leg	muscle
13	chr8:49747600-49748600	Bivalent Enhancer	Fetal Stomach	stomach
14	chr8:49747600-49748800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr8:49747800-49748400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:49747800-49748400	Enhancers	NHEK	skin
17	chr8:49747800-49748600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr8:49747800-49748800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:49747800-49748800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:49747800-49749400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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