Variant report

Variant	rs28506917
Chromosome Location	chr8:49757473-49757474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10087585	1.00[EUR][1000 genomes]
rs10087909	1.00[EUR][1000 genomes]
rs10088848	1.00[EUR][1000 genomes]
rs10091785	1.00[EUR][1000 genomes]
rs10093573	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095974	1.00[EUR][1000 genomes]
rs10096121	1.00[EUR][1000 genomes]
rs10096124	1.00[EUR][1000 genomes]
rs10109962	1.00[EUR][1000 genomes]
rs10113231	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113574	1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes]
rs12334368	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12679730	0.86[AMR][1000 genomes]
rs16938671	1.00[EUR][1000 genomes]
rs16938732	1.00[EUR][1000 genomes]
rs16938733	1.00[EUR][1000 genomes]
rs16938743	1.00[EUR][1000 genomes]
rs16938987	1.00[EUR][1000 genomes]
rs16938995	1.00[EUR][1000 genomes]
rs16939033	1.00[EUR][1000 genomes]
rs16939049	1.00[EUR][1000 genomes]
rs2062114	1.00[EUR][1000 genomes]
rs28376220	1.00[EUR][1000 genomes]
rs28478726	1.00[EUR][1000 genomes]
rs28489723	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes]
rs28537094	1.00[EUR][1000 genomes]
rs28549334	1.00[EUR][1000 genomes]
rs28615528	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28620405	1.00[EUR][1000 genomes]
rs28636874	1.00[EUR][1000 genomes]
rs28810807	1.00[EUR][1000 genomes]
rs56712301	1.00[EUR][1000 genomes]
rs58148301	1.00[EUR][1000 genomes]
rs59367437	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472028	1.00[EUR][1000 genomes]
rs6472029	1.00[EUR][1000 genomes]
rs6472030	1.00[EUR][1000 genomes]
rs6472036	1.00[EUR][1000 genomes]
rs6982290	1.00[EUR][1000 genomes]
rs6982783	1.00[EUR][1000 genomes]
rs6989173	1.00[EUR][1000 genomes]
rs6999874	1.00[EUR][1000 genomes]
rs7003481	1.00[EUR][1000 genomes]
rs7007772	1.00[EUR][1000 genomes]
rs7009872	0.86[AMR][1000 genomes]
rs7011713	1.00[EUR][1000 genomes]
rs73575632	1.00[EUR][1000 genomes]
rs73575652	1.00[EUR][1000 genomes]
rs73575695	1.00[EUR][1000 genomes]
rs73575698	1.00[EUR][1000 genomes]
rs73575700	1.00[EUR][1000 genomes]
rs73577407	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73577412	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577428	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577431	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577459	1.00[EUR][1000 genomes]
rs73577461	1.00[EUR][1000 genomes]
rs73577462	1.00[EUR][1000 genomes]
rs73577463	1.00[EUR][1000 genomes]
rs73577464	1.00[EUR][1000 genomes]
rs73680733	1.00[EUR][1000 genomes]
rs7460794	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7464556	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7819484	1.00[ASN][1000 genomes]
rs7838382	1.00[EUR][1000 genomes]
rs7840259	1.00[EUR][1000 genomes]
rs922803	1.00[EUR][1000 genomes]
rs9657079	1.00[ASN][1000 genomes]
rs975744	1.00[EUR][1000 genomes]
rs9773582	1.00[EUR][1000 genomes]
rs9886604	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49752000-49758600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:49754800-49761200	Weak transcription	Fetal Lung	lung
3	chr8:49755400-49759800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:49755400-49760000	Weak transcription	Brain Germinal Matrix	brain
5	chr8:49755400-49760200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:49757000-49758200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:49757200-49757800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:49757200-49757800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:49757200-49758000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:49757200-49758000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:49757400-49757800	Enhancers	HUES48 Cell Line	embryonic stem cell

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