Variant report

Variant	rs73577412
Chromosome Location	chr8:49725243-49725244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49720879..49722463-chr8:49724840..49727110,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10087585	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10087909	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10088320	0.90[ASN][1000 genomes]
rs10088848	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10091785	1.00[EUR][1000 genomes]
rs10093573	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095974	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10096121	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10096124	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10109962	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10113231	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113574	1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes]
rs12334368	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679730	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16938671	1.00[EUR][1000 genomes]
rs16938732	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16938733	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16938743	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16938987	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938995	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16939033	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16939049	1.00[EUR][1000 genomes]
rs2062114	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28376220	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28478726	1.00[EUR][1000 genomes]
rs28489723	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28506917	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513268	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28537094	1.00[EUR][1000 genomes]
rs28549334	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28615528	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28620405	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28636874	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28668860	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28750315	0.85[AMR][1000 genomes]
rs28776510	0.85[AMR][1000 genomes]
rs28810807	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28836871	0.85[AMR][1000 genomes]
rs56712301	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58148301	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59367437	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6472028	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472029	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472030	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472036	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6982290	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6982783	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6989173	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6999256	0.84[AMR][1000 genomes]
rs6999874	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7003481	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7007772	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7009872	1.00[AMR][1000 genomes]
rs7011713	1.00[EUR][1000 genomes]
rs73575632	1.00[EUR][1000 genomes]
rs73575652	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73575695	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73575698	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73575700	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73577407	0.81[AMR][1000 genomes]
rs73577428	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577431	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577459	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577461	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577462	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577463	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73577464	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73680733	1.00[EUR][1000 genomes]
rs73680742	0.85[AMR][1000 genomes]
rs73680744	0.85[AMR][1000 genomes]
rs73680746	0.85[AMR][1000 genomes]
rs7460794	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7814104	0.92[AMR][1000 genomes]
rs7838382	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7840259	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs922803	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs975744	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9773582	1.00[EUR][1000 genomes]
rs9886604	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526887	chr8:49724699-49729020	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49723200-49730800	Weak transcription	Spleen	Spleen
2	chr8:49723800-49727000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:49723800-49727200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr8:49724000-49728600	Weak transcription	Fetal Lung	lung
5	chr8:49724400-49725400	Enhancers	Pancreas	Pancrea
6	chr8:49724400-49730400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:49724600-49727000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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