Variant report

Variant	rs4582590
Chromosome Location	chr8:49548957-49548958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10087909	1.00[MEX][hapmap]
rs10087993	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10103620	1.00[MEX][hapmap]
rs16938333	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16938348	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16938569	1.00[MEX][hapmap]
rs16938743	1.00[MEX][hapmap]
rs2004390	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57572174	1.00[EUR][1000 genomes]
rs6472030	1.00[MEX][hapmap]
rs6472036	1.00[MEX][hapmap]
rs66764967	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67193056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989173	1.00[MEX][hapmap]
rs6999204	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823285	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7827154	1.00[MEX][hapmap]
rs878995	1.00[TSI][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49544400-49555400	Weak transcription	Osteobl	bone
3	chr8:49546600-49554400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49547200-49551200	Weak transcription	Ovary	ovary
5	chr8:49547400-49553400	Weak transcription	Fetal Lung	lung
6	chr8:49548000-49549400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:49548400-49551200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:49548600-49549400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:49548600-49551400	Enhancers	HMEC	breast
10	chr8:49548800-49549000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:49548800-49549400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:49548800-49550800	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links