Variant report

Variant	rs16938333
Chromosome Location	chr8:49562013-49562014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10087993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16938348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2004390	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4582590	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57572174	0.97[EUR][1000 genomes]
rs66764967	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67193056	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6999204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72640503	0.81[EUR][1000 genomes]
rs7823285	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7831800	0.84[YRI][hapmap]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49551200-49563400	Enhancers	Ovary	ovary
2	chr8:49556600-49562600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49556600-49565600	Weak transcription	NH-A	brain
4	chr8:49557600-49566000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:49557800-49562800	Enhancers	Fetal Brain Male	brain
6	chr8:49558000-49563400	Enhancers	Fetal Muscle Trunk	muscle
7	chr8:49558000-49563400	Enhancers	Fetal Muscle Leg	muscle
8	chr8:49558000-49564600	Enhancers	Fetal Lung	lung
9	chr8:49558200-49563200	Enhancers	Placenta	Placenta
10	chr8:49558200-49563200	Enhancers	Fetal Stomach	stomach
11	chr8:49558200-49564400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:49558600-49562800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:49559200-49562600	Weak transcription	Right Ventricle	heart
14	chr8:49559200-49565600	Weak transcription	Gastric	stomach
15	chr8:49559400-49563600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr8:49559400-49564400	Enhancers	HSMM	muscle
17	chr8:49560000-49562800	Weak transcription	Left Ventricle	heart
18	chr8:49560000-49566400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:49560200-49564400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr8:49560600-49563200	Enhancers	Colon Smooth Muscle	Colon
21	chr8:49560600-49563200	Enhancers	Pancreas	Pancrea
22	chr8:49560600-49567600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:49560800-49562400	Weak transcription	Fetal Heart	heart
24	chr8:49560800-49563000	Enhancers	Fetal Thymus	thymus
25	chr8:49560800-49563200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr8:49560800-49563400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr8:49560800-49564400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:49560800-49564800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:49561000-49562600	Weak transcription	Esophagus	oesophagus
30	chr8:49561000-49565600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:49561000-49567600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:49561000-49567600	Enhancers	Osteobl	bone
33	chr8:49561200-49562200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:49561200-49562200	Weak transcription	NHEK	skin
35	chr8:49561200-49562600	Weak transcription	Right Atrium	heart
36	chr8:49561200-49563200	Enhancers	HSMMtube	muscle
37	chr8:49561200-49563800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:49561200-49564600	Enhancers	Liver	Liver
39	chr8:49561400-49562200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr8:49561400-49562400	Enhancers	Brain Anterior Caudate	brain
41	chr8:49561400-49563000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:49561400-49563200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr8:49561400-49567000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr8:49561600-49562400	Enhancers	Fetal Brain Female	brain
45	chr8:49561600-49564200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:49561800-49562600	Enhancers	Fetal Kidney	kidney
47	chr8:49561800-49562600	Weak transcription	Small Intestine	intestine
48	chr8:49561800-49562800	Weak transcription	Psoas Muscle	Psoas
49	chr8:49561800-49563000	Enhancers	Fetal Intestine Large	intestine
50	chr8:49561800-49563200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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