Variant report

Variant	rs6999204
Chromosome Location	chr8:49567497-49567498
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49565766..49568245-chr8:49569048..49571269,2	MCF-7	breast:
2	chr8:49566599..49568855-chr8:49570957..49573457,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253892	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10087909	1.00[MEX][hapmap]
rs10087993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10103620	1.00[MEX][hapmap]
rs16938333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16938348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938569	1.00[MEX][hapmap]
rs16938743	1.00[MEX][hapmap]
rs2004390	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4582590	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57572174	1.00[EUR][1000 genomes]
rs6472030	1.00[MEX][hapmap]
rs6472036	1.00[MEX][hapmap]
rs66764967	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67193056	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989173	1.00[MEX][hapmap]
rs7823285	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7827154	1.00[MEX][hapmap]
rs7831800	0.91[YRI][hapmap]
rs878995	1.00[TSI][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49560600-49567600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:49561000-49567600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:49561000-49567600	Enhancers	Osteobl	bone
4	chr8:49563000-49569400	Weak transcription	Spleen	Spleen
5	chr8:49563200-49572800	Weak transcription	Pancreas	Pancrea
6	chr8:49563800-49567800	Enhancers	Ovary	ovary
7	chr8:49564400-49571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:49564800-49567600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:49565000-49570200	Weak transcription	Aorta	Aorta
10	chr8:49565400-49567600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:49565400-49567600	Enhancers	Fetal Stomach	stomach
12	chr8:49565400-49567600	Enhancers	HSMM	muscle
13	chr8:49565400-49567600	Enhancers	HSMMtube	muscle
14	chr8:49565400-49567600	Enhancers	NHDF-Ad	bronchial
15	chr8:49565400-49567600	Enhancers	NHLF	lung
16	chr8:49565600-49567600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:49565800-49568800	Weak transcription	Left Ventricle	heart
18	chr8:49566000-49568200	Enhancers	Fetal Lung	lung
19	chr8:49566200-49567600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:49566200-49567600	Enhancers	Fetal Muscle Leg	muscle
21	chr8:49566400-49567600	Enhancers	Placenta	Placenta
22	chr8:49566400-49567800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:49566600-49567600	Enhancers	Fetal Intestine Small	intestine
24	chr8:49566600-49567600	Enhancers	Fetal Muscle Trunk	muscle
25	chr8:49566600-49567600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr8:49566600-49568600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr8:49566800-49568400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr8:49567000-49568400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:49567000-49568400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr8:49567200-49567600	Enhancers	Lung	lung
31	chr8:49567400-49568800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:49567400-49575800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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