Variant report

Variant	rs7833357
Chromosome Location	chr8:51627280-51627281
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16915044	1.00[CEU][hapmap]
rs55834490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59279919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59837148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61469942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7008693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676397	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823279	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51608000-51648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51627000-51627400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:51627200-51627800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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