Variant report

Variant	rs7836738
Chromosome Location	chr8:118794474-118794475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10087589	0.82[AMR][1000 genomes]
rs10100591	0.84[AMR][1000 genomes]
rs10955831	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11523026	0.82[AMR][1000 genomes]
rs28709368	0.83[AMR][1000 genomes]
rs34732117	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4876385	0.84[AMR][1000 genomes]
rs4876389	0.97[EUR][1000 genomes]
rs4876390	1.00[CEU][hapmap];0.92[GIH][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes]
rs4876743	0.83[AMR][1000 genomes]
rs4876744	0.84[AMR][1000 genomes]
rs4876746	0.84[AMR][1000 genomes]
rs6469709	0.84[AMR][1000 genomes]
rs9297570	0.82[AMR][1000 genomes]
rs9297571	0.82[AMR][1000 genomes]
rs9642836	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831438	chr8:118679896-118823600	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv831439	chr8:118747352-118899118	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118751400-118805400	Weak transcription	NHLF	lung
2	chr8:118777800-118802200	Weak transcription	NHDF-Ad	bronchial
3	chr8:118779800-118801200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:118781400-118801200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:118784000-118804200	Weak transcription	NH-A	brain
6	chr8:118784200-118801400	Weak transcription	Osteobl	bone
7	chr8:118784600-118801600	Weak transcription	Aorta	Aorta
8	chr8:118785400-118800800	Weak transcription	HSMM	muscle
9	chr8:118787200-118805400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:118787400-118801200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:118789000-118800600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:118789800-118800400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:118790200-118801000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:118791000-118801000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:118791200-118798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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