Variant report

Variant	rs9642836
Chromosome Location	chr8:118805481-118805482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10087589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10092227	0.89[EUR][1000 genomes]
rs10096731	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10100591	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105902	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10112692	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955828	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11523025	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11523026	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267691	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13268974	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28402169	0.83[AMR][1000 genomes]
rs28445908	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28507251	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28530633	0.83[AMR][1000 genomes]
rs28536582	0.87[EUR][1000 genomes]
rs28613657	0.81[AMR][1000 genomes]
rs28671186	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28709368	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28835915	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4242574	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4481632	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4601352	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4876385	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876743	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876744	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876745	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4876746	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876747	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4876749	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4876752	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56257079	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6469709	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469710	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs720896	0.88[EUR][1000 genomes]
rs7836738	0.82[AMR][1000 genomes]
rs7836773	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7837683	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9297569	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9297570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643116	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9656921	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831438	chr8:118679896-118823600	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv831439	chr8:118747352-118899118	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv933429	chr8:118798533-118812170	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118795800-118805600	Weak transcription	Liver	Liver
2	chr8:118799600-118805800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:118799600-118806400	Weak transcription	HSMMtube	muscle
4	chr8:118799600-118809000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:118800000-118806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:118800000-118816400	Weak transcription	Brain Angular Gyrus	brain
7	chr8:118800200-118815800	Weak transcription	Esophagus	oesophagus
8	chr8:118800600-118805800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:118800600-118822800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:118801000-118843600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:118801200-118806200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:118801400-118808200	Strong transcription	Osteobl	bone
13	chr8:118801400-118811000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:118801600-118805800	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:118801600-118809200	Weak transcription	Adipose Nuclei	Adipose
16	chr8:118801600-118809200	Weak transcription	Fetal Brain Male	brain
17	chr8:118801600-118809600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:118801600-118809600	Weak transcription	Gastric	stomach
19	chr8:118801600-118810000	Weak transcription	Ovary	ovary
20	chr8:118801800-118806400	Weak transcription	Aorta	Aorta
21	chr8:118802200-118821200	Strong transcription	NHDF-Ad	bronchial
22	chr8:118802400-118820400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:118802800-118806200	Weak transcription	Fetal Lung	lung
24	chr8:118803000-118805800	Weak transcription	Primary T cells from cord blood	blood
25	chr8:118803000-118805800	Weak transcription	Fetal Intestine Large	intestine
26	chr8:118803000-118808400	Weak transcription	HMEC	breast
27	chr8:118803200-118806200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr8:118803600-118811600	Weak transcription	Fetal Intestine Small	intestine
29	chr8:118804000-118805600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr8:118804000-118809200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:118804200-118805800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr8:118804200-118809400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr8:118804200-118810000	Weak transcription	Lung	lung
34	chr8:118804200-118813600	Strong transcription	NH-A	brain
35	chr8:118804200-118836000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:118804200-118838000	Strong transcription	HSMM	muscle
37	chr8:118804400-118806200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr8:118804400-118816400	Weak transcription	Spleen	Spleen
39	chr8:118804600-118816800	Weak transcription	Small Intestine	intestine
40	chr8:118804800-118815600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr8:118804800-118815800	Weak transcription	Colonic Mucosa	Colon
42	chr8:118804800-118822400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr8:118805000-118809200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:118805200-118806200	Strong transcription	NHEK	skin
45	chr8:118805200-118807600	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr8:118805200-118814200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr8:118805200-118819400	Weak transcription	Thymus	Thymus
48	chr8:118805400-118806000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr8:118805400-118806200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr8:118805400-118806800	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links