Variant report

Variant	rs7836804
Chromosome Location	chr8:96128203-96128204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96111173..96112955-chr8:96127846..96130132,2	K562	blood:
2	chr8:96096767..96100219-chr8:96128186..96130609,3	MCF-7	breast:
3	chr8:96128007..96129787-chr8:96157518..96159480,2	MCF-7	breast:
4	chr8:96037608..96039540-chr8:96126841..96128401,2	K562	blood:
5	chr8:96119972..96121573-chr8:96125968..96128452,2	MCF-7	breast:
6	chr8:96125724..96129617-chr8:96136220..96139079,3	MCF-7	breast:
7	chr8:96120310..96131373-chr8:96143717..96153210,36	MCF-7	breast:
8	chr8:96125842..96128566-chr8:96131199..96132912,2	K562	blood:
9	chr8:96107905..96110477-chr8:96127013..96129331,2	K562	blood:
10	chr8:96096428..96097966-chr8:96125843..96128409,2	K562	blood:
11	chr8:96126608..96129531-chr8:96144702..96147326,2	K562	blood:
12	chr8:96122201..96128454-chr8:96143807..96149954,24	MCF-7	breast:
13	chr8:96107931..96110001-chr8:96127728..96130296,2	MCF-7	breast:
14	chr8:96104110..96106286-chr8:96127636..96129907,2	K562	blood:
15	chr8:96122158..96124465-chr8:96128048..96130370,2	K562	blood:
16	chr8:96103364..96105237-chr8:96127596..96129406,2	MCF-7	breast:
17	chr8:96125644..96128567-chr8:96136437..96138387,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254248	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000175895	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10102994	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10808672	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11781181	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1466169	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1561714	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1561715	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs172469	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1975425	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2044034	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2583365	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2599726	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs297557	0.84[AMR][1000 genomes]
rs4392868	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4735344	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4735345	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4735347	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4735350	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56617377	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6983365	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6987741	0.94[EUR][1000 genomes]
rs7000568	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7000734	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7002233	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs732280	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7822998	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7845016	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv891207	chr8:96106037-96160914	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96122400-96128400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96124200-96130800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:96124600-96129000	Enhancers	Fetal Muscle Leg	muscle
4	chr8:96125000-96129000	Weak transcription	Adipose Nuclei	Adipose
5	chr8:96126000-96129200	Weak transcription	Spleen	Spleen
6	chr8:96126000-96136200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:96126200-96129200	Weak transcription	Right Atrium	heart
8	chr8:96126600-96133800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:96127200-96130400	Enhancers	Primary B cells from cord blood	blood
10	chr8:96127400-96128600	Weak transcription	Fetal Stomach	stomach
11	chr8:96127600-96129400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr8:96127800-96128400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:96127800-96128400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:96127800-96128400	Flanking Active TSS	Placenta	Placenta
15	chr8:96127800-96128600	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr8:96127800-96128800	Weak transcription	Small Intestine	intestine
17	chr8:96127800-96129000	Flanking Active TSS	K562	blood
18	chr8:96127800-96129200	Enhancers	HepG2	liver
19	chr8:96127800-96129400	Enhancers	Fetal Thymus	thymus
20	chr8:96128000-96128400	Active TSS	Duodenum Mucosa	Duodenum
21	chr8:96128000-96128400	Active TSS	NHDF-Ad	bronchial
22	chr8:96128000-96128400	Active TSS	NHEK	skin
23	chr8:96128000-96128600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:96128000-96128800	Enhancers	Fetal Muscle Trunk	muscle
25	chr8:96128000-96129000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:96128000-96145200	Weak transcription	A549	lung
27	chr8:96128200-96128400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:96128200-96128600	Weak transcription	Stomach Mucosa	stomach
29	chr8:96128200-96128600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr8:96128200-96128800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr8:96128200-96128800	Active TSS	GM12878-XiMat	blood
32	chr8:96128200-96129200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:96128200-96130400	Enhancers	Primary B cells from peripheral blood	blood
34	chr8:96128200-96133400	Weak transcription	Left Ventricle	heart

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