Variant report

Variant	rs4735344
Chromosome Location	chr8:96114873-96114874
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96114692..96118585-chr8:96123504..96126472,3	K562	blood:
2	chr8:96113223..96116394-chr8:96203733..96206616,4	MCF-7	breast:
3	chr8:96112732..96115050-chr8:96203183..96205638,2	MCF-7	breast:
4	chr8:95959986..95963224-chr8:96113461..96115470,3	MCF-7	breast:
5	chr8:96107778..96115564-chr8:96144421..96149353,22	MCF-7	breast:
6	chr8:96111950..96115004-chr8:96279819..96283605,3	MCF-7	breast:
7	chr8:96114675..96115219-chr8:96215202..96216074,2	MCF-7	breast:
8	chr8:95835418..95837693-chr8:96113471..96115215,3	MCF-7	breast:
9	chr8:96068899..96069922-chr8:96114442..96115469,5	MCF-7	breast:
10	chr8:95907523..95909755-chr8:96112942..96116370,3	MCF-7	breast:
11	chr8:95999822..96002067-chr8:96113841..96115533,2	MCF-7	breast:
12	chr8:96108471..96116302-chr8:96144708..96150629,15	MCF-7	breast:
13	chr8:96113683..96115248-chr8:96145285..96147511,2	K562	blood:
14	chr8:96077629..96090166-chr8:96105796..96116852,50	MCF-7	breast:
15	chr8:95959569..95962323-chr8:96114600..96116537,2	MCF-7	breast:
16	chr8:96113444..96115099-chr8:96152437..96154203,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253878	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction
ENSG00000164938	Chromatin interaction
ENSG00000164941	Chromatin interaction
ENSG00000245080	Chromatin interaction
ENSG00000175895	Chromatin interaction
ENSG00000175305	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10102994	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10808672	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11781181	1.00[CEU][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1466169	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1561714	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1561715	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs172469	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1975425	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2044034	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2583365	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2599726	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2678841	0.84[CEU][hapmap]
rs297550	0.89[CEU][hapmap]
rs297557	0.81[AMR][1000 genomes]
rs4392868	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4735345	0.89[EUR][1000 genomes]
rs4735347	0.87[EUR][1000 genomes]
rs4735350	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56617377	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6471516	0.84[CEU][hapmap]
rs6983365	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6987741	0.95[EUR][1000 genomes]
rs7000568	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7000734	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7002233	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs732280	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822998	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7836804	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7845016	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv891205	chr8:96062601-96115476	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
5	nsv891206	chr8:96092251-96115476	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv891207	chr8:96106037-96160914	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96113400-96115000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:96113800-96122400	Weak transcription	Gastric	stomach
3	chr8:96113800-96122400	Weak transcription	Pancreas	Pancrea
4	chr8:96113800-96127800	Weak transcription	Right Ventricle	heart
5	chr8:96114000-96115000	Enhancers	HepG2	liver
6	chr8:96114000-96116800	Weak transcription	Brain Angular Gyrus	brain
7	chr8:96114200-96115200	Weak transcription	Osteobl	bone
8	chr8:96114400-96115000	ZNF genes & repeats	GM12878-XiMat	blood
9	chr8:96114400-96115200	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr8:96114400-96115800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:96114600-96115000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:96114600-96115200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr8:96114600-96115200	Weak transcription	Stomach Mucosa	stomach
14	chr8:96114600-96115400	ZNF genes & repeats	Brain Germinal Matrix	brain
15	chr8:96114600-96115600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:96114600-96115600	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr8:96114600-96115600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
18	chr8:96114600-96115800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:96114600-96115800	ZNF genes & repeats	K562	blood
20	chr8:96114800-96115000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr8:96114800-96115000	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr8:96114800-96115000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
23	chr8:96114800-96115000	ZNF genes & repeats	Thymus	Thymus
24	chr8:96114800-96115200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain

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