Variant report

Variant	rs7839157
Chromosome Location	chr8:113271461-113271462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10105433	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10808452	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11786035	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11786941	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1420850	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1420851	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1420854	0.82[EUR][1000 genomes]
rs1592625	0.80[EUR][1000 genomes]
rs1833320	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1895014	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1895015	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1895016	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28688794	0.81[EUR][1000 genomes]
rs4143627	0.81[EUR][1000 genomes]
rs4876459	0.82[EUR][1000 genomes]
rs4876460	0.82[EUR][1000 genomes]
rs6983302	0.82[EUR][1000 genomes]
rs6992636	0.81[AMR][1000 genomes]
rs7003531	0.81[EUR][1000 genomes]
rs7816045	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7820413	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7830950	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs929684	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9297467	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs950985	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113267600-113275000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:113268800-113275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:113269200-113275000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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