Variant report

Variant	rs7840980
Chromosome Location	chr8:10954863-10954864
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10953851..10956299-chr8:10959068..10961747,2	MCF-7	breast:
2	chr8:10953495..10955337-chr8:10955774..10957347,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10100449	1.00[CHB][hapmap]
rs10108304	1.00[CHB][hapmap]
rs10110123	1.00[CHB][hapmap]
rs10111751	1.00[CHB][hapmap]
rs10282848	1.00[CHB][hapmap]
rs11250110	1.00[CHB][hapmap]
rs11250111	1.00[CHB][hapmap]
rs11250120	1.00[CHB][hapmap]
rs11784312	1.00[CHB][hapmap]
rs11785788	1.00[CHB][hapmap]
rs11986748	1.00[CHB][hapmap]
rs11991121	1.00[CHB][hapmap]
rs11996027	1.00[CHB][hapmap]
rs11998417	1.00[CHB][hapmap]
rs12216784	1.00[CHB][hapmap]
rs17152862	1.00[CHB][hapmap];0.91[AMR][1000 genomes]
rs17152881	1.00[CHB][hapmap];0.91[AMR][1000 genomes]
rs17152921	1.00[CHB][hapmap]
rs17152930	1.00[CHB][hapmap]
rs17152938	1.00[CHB][hapmap]
rs17152949	0.83[AMR][1000 genomes]
rs17152978	1.00[CHB][hapmap]
rs17722940	1.00[CHB][hapmap]
rs17725809	1.00[CHB][hapmap]
rs17726352	1.00[CHB][hapmap]
rs17779093	1.00[CHB][hapmap]
rs2409732	1.00[CHB][hapmap]
rs2898254	1.00[CHB][hapmap]
rs2898258	1.00[CHB][hapmap]
rs4074356	1.00[CHB][hapmap]
rs4076425	1.00[CHB][hapmap]
rs4270924	1.00[CHB][hapmap]
rs4349949	1.00[CHB][hapmap]
rs4370496	1.00[CHB][hapmap]
rs4386942	1.00[CHB][hapmap]
rs4841473	1.00[CHB][hapmap]
rs6601550	1.00[CHB][hapmap]
rs6983680	1.00[CHB][hapmap]
rs6994928	1.00[CHB][hapmap]
rs6999969	1.00[CHB][hapmap]
rs7000298	1.00[CHB][hapmap]
rs7000431	1.00[CHB][hapmap]
rs7010099	1.00[CHB][hapmap]
rs7010126	1.00[CHB][hapmap]
rs7014291	1.00[CHB][hapmap]
rs7016361	1.00[CHB][hapmap]
rs7350066	1.00[CHB][hapmap]
rs7350072	1.00[CHB][hapmap]
rs73545436	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820231	1.00[CHB][hapmap]
rs7820777	1.00[CHB][hapmap]
rs7822400	1.00[CHB][hapmap]
rs7837437	0.83[AMR][1000 genomes]
rs7838051	1.00[CHB][hapmap]
rs7841435	1.00[CHB][hapmap]
rs7842214	1.00[CHB][hapmap]
rs7845088	1.00[CHB][hapmap]
rs9329237	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10950000-10955400	Weak transcription	Fetal Heart	heart
2	chr8:10950600-10965000	Weak transcription	Gastric	stomach
3	chr8:10951000-10956600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:10954400-10959200	Weak transcription	Pancreas	Pancrea

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