Variant report

Variant	rs17779093
Chromosome Location	chr8:10890313-10890314
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10883944..10886637-chr8:10888412..10890996,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10091993	0.89[CEU][hapmap]
rs10100449	1.00[CHB][hapmap]
rs10108304	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10110123	1.00[CHB][hapmap]
rs10111751	1.00[CHB][hapmap]
rs10282848	1.00[CHB][hapmap]
rs11250110	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11250111	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs11250120	1.00[CHB][hapmap]
rs11784312	1.00[CHB][hapmap]
rs11785788	1.00[CHB][hapmap]
rs11986748	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11991121	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs11996027	1.00[CHB][hapmap]
rs11998417	1.00[CHB][hapmap]
rs12216784	1.00[CHB][hapmap]
rs17152862	1.00[CHB][hapmap]
rs17152881	1.00[CHB][hapmap]
rs17152921	1.00[CHB][hapmap]
rs17152930	1.00[CHB][hapmap]
rs17152938	1.00[CHB][hapmap]
rs17152978	1.00[CHB][hapmap]
rs17722940	1.00[CHB][hapmap]
rs17725809	1.00[CHB][hapmap]
rs17726352	1.00[CHB][hapmap]
rs2409732	1.00[CHB][hapmap]
rs2898254	1.00[CHB][hapmap]
rs2898258	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs35083028	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35234078	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4074356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4076424	0.86[CEU][hapmap];0.97[EUR][1000 genomes]
rs4076425	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs4270924	1.00[CHB][hapmap]
rs4349949	1.00[CHB][hapmap]
rs4370496	1.00[CHB][hapmap]
rs4386942	1.00[CHB][hapmap]
rs4841473	1.00[CHB][hapmap]
rs56011306	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57462408	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6601550	1.00[CHB][hapmap]
rs6983680	1.00[CHB][hapmap]
rs6994928	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999969	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7000298	1.00[CHB][hapmap]
rs7000431	1.00[CHB][hapmap]
rs7010099	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010126	1.00[CHB][hapmap]
rs7014291	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs7016361	1.00[CHB][hapmap]
rs73196893	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73196895	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7350066	1.00[CHB][hapmap]
rs7350072	1.00[CHB][hapmap]
rs7820231	1.00[CHB][hapmap]
rs7820777	1.00[CHB][hapmap]
rs7822400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7838051	1.00[CHB][hapmap]
rs7840980	1.00[CHB][hapmap]
rs7841435	1.00[CHB][hapmap]
rs7842214	1.00[CHB][hapmap]
rs7845088	1.00[CHB][hapmap]
rs9329237	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv3438938	chr8:10888542-10893040	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	16 gene(s)	inside rSNPs	diseases
5	esv3447417	chr8:10889142-10892340	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10874400-10892800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:10879600-10890400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:10879800-10890600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:10880000-10896800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:10880200-10890400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:10880200-10890400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:10880200-10890600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:10881400-10893200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr8:10883400-10899600	Weak transcription	Brain Anterior Caudate	brain
10	chr8:10884400-10892800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:10887800-10894800	Weak transcription	Fetal Stomach	stomach
12	chr8:10888200-10890600	Enhancers	Fetal Brain Male	brain
13	chr8:10888400-10892600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:10888800-10890600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:10889000-10890600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:10889000-10891800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:10889200-10890600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr8:10889200-10890600	Enhancers	Ovary	ovary
19	chr8:10889400-10890600	Enhancers	Fetal Brain Female	brain
20	chr8:10889600-10890400	Enhancers	Brain Cingulate Gyrus	brain
21	chr8:10889800-10892200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:10889800-10894000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:10889800-10910800	Weak transcription	HSMMtube	muscle
24	chr8:10890000-10890800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:10890200-10890400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr8:10890200-10890400	Genic enhancers	Brain Angular Gyrus	brain
27	chr8:10890200-10890400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr8:10890200-10890400	Enhancers	Esophagus	oesophagus
29	chr8:10890200-10890400	Bivalent Enhancer	Right Ventricle	heart
30	chr8:10890200-10890400	ZNF genes & repeats	Spleen	Spleen
31	chr8:10890200-10890800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:10890200-10891200	Strong transcription	Gastric	stomach
33	chr8:10890200-10891800	Strong transcription	Pancreas	Pancrea
34	chr8:10890200-10891800	Strong transcription	Stomach Smooth Muscle	stomach

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