Variant report

Variant	rs7843596
Chromosome Location	chr8:102955639-102955640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10429306	1.00[EUR][1000 genomes]
rs11996181	1.00[EUR][1000 genomes]
rs12114203	1.00[EUR][1000 genomes]
rs12114981	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16868766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868801	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868803	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58837482	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73279295	1.00[EUR][1000 genomes]
rs73279297	1.00[EUR][1000 genomes]
rs73279300	1.00[EUR][1000 genomes]
rs73279301	1.00[EUR][1000 genomes]
rs73281304	1.00[EUR][1000 genomes]
rs73281308	1.00[EUR][1000 genomes]
rs73293347	1.00[EUR][1000 genomes]
rs7842428	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9642974	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9969490	1.00[EUR][1000 genomes]
rs9969492	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102920600-102956600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102944400-102964000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:102948600-102962600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102951000-102961400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:102953600-102964800	Weak transcription	Ovary	ovary
6	chr8:102953800-102959400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:102954600-102962800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:102955200-102956600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:102955200-102958000	Enhancers	Fetal Heart	heart
10	chr8:102955400-102956800	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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