Variant report

Variant	rs7843989
Chromosome Location	chr8:59468464-59468465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59466361..59468557-chr8:59520304..59521989,2	K562	blood:
2	chr8:59467543..59471548-chr8:59563276..59565061,3	K562	blood:
3	chr8:59466189..59470274-chr8:59507050..59509287,3	MCF-7	breast:
4	chr8:59465077..59468758-chr8:59483246..59485751,3	MCF-7	breast:
5	chr8:59460875..59463855-chr8:59467484..59470107,3	K562	blood:
6	chr8:59430665..59433091-chr8:59466254..59469171,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000035681	Chromatin interaction
ENSG00000137575	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10085973	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10090425	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10090964	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10092359	0.85[EUR][1000 genomes]
rs10094910	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10099153	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10099240	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10099912	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10102709	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10104292	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10110111	0.86[EUR][1000 genomes]
rs10111052	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10111506	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10113750	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10504256	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1050488	0.92[EUR][1000 genomes]
rs1050504	0.85[EUR][1000 genomes]
rs11776003	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11783174	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12335008	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12674568	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12676593	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12677290	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12680104	0.85[EUR][1000 genomes]
rs12680996	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16923562	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16923564	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16923588	0.85[EUR][1000 genomes]
rs17263989	0.86[EUR][1000 genomes]
rs1991359	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2634527	0.81[ASN][1000 genomes]
rs28429491	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28650441	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28656336	0.86[EUR][1000 genomes]
rs28809811	0.92[AMR][1000 genomes]
rs3739327	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808609	0.85[EUR][1000 genomes]
rs4282557	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4400366	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4400367	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4579515	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55774738	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59979442	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6471729	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471731	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981601	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6986129	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6987187	0.82[ASN][1000 genomes]
rs6995115	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7009248	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7009374	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7011095	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7014398	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72647434	0.87[EUR][1000 genomes]
rs72647435	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72647443	0.85[EUR][1000 genomes]
rs7817515	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7825996	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7826122	0.83[EUR][1000 genomes]
rs7826603	0.83[EUR][1000 genomes]
rs7827910	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7840932	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844231	0.84[EUR][1000 genomes]
rs9297995	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9297996	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9297997	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297998	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9297999	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59464800-59468600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:59465000-59469200	Active TSS	Fetal Brain Female	brain
3	chr8:59465000-59472200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:59465400-59469000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:59465600-59469000	Active TSS	Stomach Smooth Muscle	stomach
6	chr8:59466000-59468800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:59466400-59469000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr8:59466400-59470200	Weak transcription	Gastric	stomach
9	chr8:59466400-59472600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:59466600-59468800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:59466600-59470200	Weak transcription	Spleen	Spleen
12	chr8:59466600-59470800	Weak transcription	Lung	lung
13	chr8:59466600-59472600	Weak transcription	Esophagus	oesophagus
14	chr8:59466600-59472600	Weak transcription	Pancreas	Pancrea
15	chr8:59466800-59470200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:59466800-59472400	Weak transcription	Aorta	Aorta
17	chr8:59466800-59472800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:59466800-59479800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr8:59467000-59472200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:59467000-59472400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:59467000-59472600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr8:59467000-59472800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:59467200-59468600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:59467200-59468800	Weak transcription	Fetal Stomach	stomach
25	chr8:59467200-59468800	Weak transcription	Stomach Mucosa	stomach
26	chr8:59467200-59469200	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr8:59467200-59469400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr8:59467200-59486000	Weak transcription	Brain Angular Gyrus	brain
29	chr8:59467400-59468800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr8:59467400-59559400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr8:59467600-59468600	Active TSS	Left Ventricle	heart
32	chr8:59467600-59468600	Flanking Active TSS	HUVEC	blood vessel
33	chr8:59467600-59469400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr8:59467600-59472400	Weak transcription	Fetal Intestine Large	intestine
35	chr8:59467600-59479200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:59467800-59468600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:59467800-59469200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
38	chr8:59467800-59471200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:59467800-59471200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr8:59467800-59471200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr8:59467800-59471400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:59467800-59472000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:59468000-59468600	Enhancers	Primary T cells from cord blood	blood
44	chr8:59468000-59468800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr8:59468000-59468800	Weak transcription	Colon Smooth Muscle	Colon
46	chr8:59468000-59468800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr8:59468000-59468800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr8:59468000-59469200	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr8:59468000-59469200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr8:59468000-59469200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links