Variant report

Variant	rs10092359
Chromosome Location	chr8:59471638-59471639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59470291..59472157-chr8:59493284..59495142,2	K562	blood:
2	chr8:59434915..59437240-chr8:59469391..59471843,2	MCF-7	breast:
3	chr8:59469692..59471649-chr8:59473194..59476156,2	MCF-7	breast:
4	chr8:59463439..59469524-chr8:59469766..59475373,11	MCF-7	breast:
5	chr8:59464522..59468575-chr8:59469283..59472849,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137575	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10085973	0.88[EUR][1000 genomes]
rs10090425	0.89[EUR][1000 genomes]
rs10090964	0.89[EUR][1000 genomes]
rs10094910	0.88[EUR][1000 genomes]
rs10099153	0.95[EUR][1000 genomes]
rs10099240	0.88[EUR][1000 genomes]
rs10099912	0.95[EUR][1000 genomes]
rs10100873	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10102709	0.89[EUR][1000 genomes]
rs10104292	0.81[EUR][1000 genomes]
rs10106272	0.84[AMR][1000 genomes]
rs10107530	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110065	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10110111	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10111052	0.88[EUR][1000 genomes]
rs10111506	0.88[EUR][1000 genomes]
rs10113750	0.87[EUR][1000 genomes]
rs10504256	0.81[EUR][1000 genomes]
rs1050488	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1050504	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774558	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775194	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11776003	0.89[EUR][1000 genomes]
rs11782455	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783174	0.96[EUR][1000 genomes]
rs11785141	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335008	0.94[EUR][1000 genomes]
rs12674568	0.89[EUR][1000 genomes]
rs12676593	0.95[EUR][1000 genomes]
rs12677290	0.80[EUR][1000 genomes]
rs12678669	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12679938	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12680104	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12680996	0.88[EUR][1000 genomes]
rs16923562	0.88[EUR][1000 genomes]
rs16923564	0.88[EUR][1000 genomes]
rs17263989	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1976162	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991359	0.88[EUR][1000 genomes]
rs2279460	0.84[EUR][1000 genomes]
rs2279462	0.85[EUR][1000 genomes]
rs28429491	0.88[EUR][1000 genomes]
rs28650441	0.88[EUR][1000 genomes]
rs28656336	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28711402	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28809811	0.85[EUR][1000 genomes]
rs3739327	0.87[EUR][1000 genomes]
rs3808609	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3816846	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282557	0.88[EUR][1000 genomes]
rs4400366	0.81[EUR][1000 genomes]
rs4400367	0.88[EUR][1000 genomes]
rs4579515	0.81[EUR][1000 genomes]
rs55774738	0.88[EUR][1000 genomes]
rs56249776	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59979442	0.95[EUR][1000 genomes]
rs6471729	0.88[EUR][1000 genomes]
rs6471731	0.83[EUR][1000 genomes]
rs6981601	0.88[EUR][1000 genomes]
rs6986129	0.88[EUR][1000 genomes]
rs6995115	0.80[EUR][1000 genomes]
rs7009248	0.88[EUR][1000 genomes]
rs7009374	0.88[EUR][1000 genomes]
rs7011095	0.94[EUR][1000 genomes]
rs7014398	0.88[EUR][1000 genomes]
rs72647424	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72647425	0.87[AMR][1000 genomes]
rs72647434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72647435	0.94[EUR][1000 genomes]
rs72647437	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72647443	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817515	0.87[EUR][1000 genomes]
rs7825996	0.94[EUR][1000 genomes]
rs7827910	0.88[EUR][1000 genomes]
rs7840932	0.81[EUR][1000 genomes]
rs7843989	0.85[EUR][1000 genomes]
rs9297995	0.87[EUR][1000 genomes]
rs9297996	0.81[EUR][1000 genomes]
rs9297997	0.88[EUR][1000 genomes]
rs9297998	0.81[EUR][1000 genomes]
rs9297999	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890939	chr8:59471187-59544413	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59465000-59472200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:59466400-59472600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:59466600-59472600	Weak transcription	Esophagus	oesophagus
4	chr8:59466600-59472600	Weak transcription	Pancreas	Pancrea
5	chr8:59466800-59472400	Weak transcription	Aorta	Aorta
6	chr8:59466800-59472800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:59466800-59479800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:59467000-59472200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:59467000-59472400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:59467000-59472600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:59467000-59472800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:59467200-59486000	Weak transcription	Brain Angular Gyrus	brain
13	chr8:59467400-59559400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:59467600-59472400	Weak transcription	Fetal Intestine Large	intestine
15	chr8:59467600-59479200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:59467800-59472000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:59468000-59472200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:59468000-59472200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr8:59468000-59472200	Weak transcription	Brain Germinal Matrix	brain
20	chr8:59468000-59472200	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:59468000-59472600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:59468000-59472800	Weak transcription	Colonic Mucosa	Colon
23	chr8:59468000-59473000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr8:59468000-59475800	Weak transcription	Brain Hippocampus Middle	brain
25	chr8:59468000-59476600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:59468000-59479000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr8:59468000-59479600	Weak transcription	HepG2	liver
28	chr8:59468000-59480000	Weak transcription	Brain Substantia Nigra	brain
29	chr8:59468200-59472200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr8:59468200-59472200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:59468200-59472200	Weak transcription	HSMMtube	muscle
32	chr8:59468200-59472200	Weak transcription	NH-A	brain
33	chr8:59468200-59472400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr8:59468200-59472400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:59468200-59472400	Weak transcription	Thymus	Thymus
36	chr8:59468200-59474200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:59468200-59480000	Weak transcription	Fetal Kidney	kidney
38	chr8:59468400-59472200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr8:59468400-59472200	Weak transcription	Fetal Thymus	thymus
40	chr8:59468400-59472200	Weak transcription	Small Intestine	intestine
41	chr8:59468400-59472200	Weak transcription	NHLF	lung
42	chr8:59468400-59472400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr8:59468400-59472400	Weak transcription	Right Atrium	heart
44	chr8:59468400-59472600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr8:59468400-59475800	Weak transcription	Liver	Liver
46	chr8:59468400-59476200	Weak transcription	HMEC	breast
47	chr8:59468600-59472200	Weak transcription	NHEK	skin
48	chr8:59468600-59472400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:59468600-59472800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr8:59469000-59471800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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