Variant report

Variant	rs10106272
Chromosome Location	chr8:59418851-59418852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59417943..59419729-chr8:59466208..59468213,2	K562	blood:
2	chr8:59412171..59413812-chr8:59417308..59420098,2	K562	blood:
3	chr8:59412344..59414361-chr8:59418846..59420649,2	K562	blood:

Variant related genes	Relation type
ENSG00000167910	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10090964	0.82[EUR][1000 genomes]
rs10092359	0.84[AMR][1000 genomes]
rs10100873	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10102709	0.84[EUR][1000 genomes]
rs10108398	0.80[EUR][1000 genomes]
rs10110065	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10110111	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10111506	0.83[EUR][1000 genomes]
rs10113750	0.82[EUR][1000 genomes]
rs1050488	0.83[AMR][1000 genomes]
rs1050504	0.84[AMR][1000 genomes]
rs11775194	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11776003	0.81[EUR][1000 genomes]
rs12674568	0.84[EUR][1000 genomes]
rs12678669	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12679938	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12680104	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12680996	0.82[EUR][1000 genomes]
rs16923562	0.82[EUR][1000 genomes]
rs16923564	0.83[EUR][1000 genomes]
rs17263989	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1991359	0.83[EUR][1000 genomes]
rs28429491	0.83[EUR][1000 genomes]
rs28650441	0.83[EUR][1000 genomes]
rs28656336	0.87[AMR][1000 genomes]
rs28711402	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28809811	0.82[EUR][1000 genomes]
rs3808609	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55774738	0.83[EUR][1000 genomes]
rs6471729	0.82[EUR][1000 genomes]
rs6981601	0.83[EUR][1000 genomes]
rs6986129	0.83[EUR][1000 genomes]
rs7009248	0.83[EUR][1000 genomes]
rs7009374	0.83[EUR][1000 genomes]
rs7014398	0.82[EUR][1000 genomes]
rs72647424	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72647425	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72647434	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72647437	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7817515	0.82[EUR][1000 genomes]
rs8192870	0.82[ASN][1000 genomes]
rs9297995	0.84[EUR][1000 genomes]
rs9297999	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59416200-59419000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr8:59417800-59419400	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links