Variant report

Variant	rs10108398
Chromosome Location	chr8:59440824-59440825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10090964	0.80[CEU][hapmap]
rs10106272	0.80[EUR][1000 genomes]
rs10110065	0.83[EUR][1000 genomes]
rs11775194	0.91[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs11776003	0.80[CEU][hapmap]
rs17263989	0.80[CEU][hapmap]
rs1991359	0.80[CEU][hapmap]
rs6471729	0.80[CEU][hapmap]
rs7009248	0.80[CEU][hapmap]
rs7009374	0.80[CEU][hapmap]
rs72647424	0.83[EUR][1000 genomes]
rs72647425	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv6212	chr8:59435671-59451750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59435400-59442400	Weak transcription	Gastric	stomach
2	chr8:59439200-59441400	Enhancers	Hela-S3	cervix
3	chr8:59439600-59441200	Enhancers	Fetal Heart	heart
4	chr8:59439600-59442000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:59439800-59441200	Weak transcription	Placenta	Placenta
6	chr8:59439800-59441200	Weak transcription	Right Atrium	heart
7	chr8:59439800-59442000	Weak transcription	Aorta	Aorta
8	chr8:59439800-59442000	Weak transcription	Left Ventricle	heart
9	chr8:59440200-59441200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:59440400-59441800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:59440400-59465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:59440800-59442200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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