Variant report

Variant	rs72647424
Chromosome Location	chr8:59436655-59436656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59434915..59437240-chr8:59469391..59471843,2	MCF-7	breast:
2	chr8:59425928..59427562-chr8:59435770..59438126,2	K562	blood:
3	chr8:59433987..59437389-chr8:59439305..59441373,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10090964	0.84[EUR][1000 genomes]
rs10092359	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10100873	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10102709	0.86[EUR][1000 genomes]
rs10106272	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10107530	0.80[AMR][1000 genomes]
rs10108398	0.83[EUR][1000 genomes]
rs10110065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110111	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10111506	0.85[EUR][1000 genomes]
rs10113750	0.84[EUR][1000 genomes]
rs1050488	0.86[AMR][1000 genomes]
rs1050504	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11774558	0.80[AMR][1000 genomes]
rs11775194	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776003	0.83[EUR][1000 genomes]
rs11782455	0.80[AMR][1000 genomes]
rs11783174	0.81[EUR][1000 genomes]
rs11785141	0.80[AMR][1000 genomes]
rs12335008	0.81[EUR][1000 genomes]
rs12674568	0.86[EUR][1000 genomes]
rs12678669	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12679938	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12680104	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12680996	0.84[EUR][1000 genomes]
rs16923562	0.84[EUR][1000 genomes]
rs16923564	0.85[EUR][1000 genomes]
rs17263989	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1976162	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1991359	0.85[EUR][1000 genomes]
rs28429491	0.85[EUR][1000 genomes]
rs28650441	0.85[EUR][1000 genomes]
rs28656336	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28711402	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28809811	0.84[EUR][1000 genomes]
rs3808609	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3816846	0.80[AMR][1000 genomes]
rs55774738	0.85[EUR][1000 genomes]
rs56249776	0.80[AMR][1000 genomes]
rs6471729	0.84[EUR][1000 genomes]
rs6981601	0.85[EUR][1000 genomes]
rs6986129	0.85[EUR][1000 genomes]
rs7009248	0.85[EUR][1000 genomes]
rs7009374	0.85[EUR][1000 genomes]
rs7014398	0.84[EUR][1000 genomes]
rs72647425	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72647434	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72647435	0.81[EUR][1000 genomes]
rs72647437	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7817515	0.84[EUR][1000 genomes]
rs7825996	0.80[EUR][1000 genomes]
rs8192870	0.80[ASN][1000 genomes]
rs9297995	0.86[EUR][1000 genomes]
rs9297999	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv6212	chr8:59435671-59451750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59435400-59442400	Weak transcription	Gastric	stomach

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