Variant report

Variant	rs11775194
Chromosome Location	chr8:59439777-59439778
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59433987..59437389-chr8:59439305..59441373,3	K562	blood:
2	chr8:59438563..59440358-chr8:59464791..59467161,2	MCF-7	breast:
3	chr8:59433987..59436309-chr8:59439305..59441373,2	K562	blood:
4	chr8:59437757..59440570-chr8:59464434..59466079,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SDCBP-1	chr8:59439455-59439891	XLOC_006811
2	lnc-SDCBP-1	chr8:59439455-59439891	XLOC_006811

Variant related genes	Relation type
ENSG00000137575	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10085973	0.83[CEU][hapmap]
rs10090425	0.83[CEU][hapmap]
rs10090964	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10092359	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10099153	0.82[CEU][hapmap]
rs10099912	0.83[CEU][hapmap]
rs10100873	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10102709	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs10106272	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10107530	0.80[AMR][1000 genomes]
rs10108398	0.83[EUR][1000 genomes]
rs10110065	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110111	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10111180	0.83[CEU][hapmap]
rs10111506	0.85[EUR][1000 genomes]
rs10113323	0.83[CEU][hapmap]
rs10113750	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs1050488	0.86[CEU][hapmap];0.86[AMR][1000 genomes]
rs1050504	0.82[CEU][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11774558	0.80[AMR][1000 genomes]
rs11776003	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs11782455	0.80[YRI][hapmap];0.80[AMR][1000 genomes]
rs11783174	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs11785141	0.80[AMR][1000 genomes]
rs12335008	0.81[EUR][1000 genomes]
rs12674568	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs12676593	0.83[CEU][hapmap]
rs12678669	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12679938	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12680104	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12680996	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs16923562	0.84[EUR][1000 genomes]
rs16923564	0.85[EUR][1000 genomes]
rs16923594	0.83[CEU][hapmap]
rs17263989	0.88[CEU][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17272151	0.82[CEU][hapmap]
rs1976162	0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs1991359	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs28429491	0.85[EUR][1000 genomes]
rs28650441	0.85[EUR][1000 genomes]
rs28656336	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28711402	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28809811	0.84[EUR][1000 genomes]
rs3808609	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3816846	0.80[AMR][1000 genomes]
rs4282557	0.83[CEU][hapmap]
rs4400367	0.83[CEU][hapmap]
rs55774738	0.85[EUR][1000 genomes]
rs56249776	0.80[AMR][1000 genomes]
rs6471729	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs6981601	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs6986129	0.85[EUR][1000 genomes]
rs7009248	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs7009374	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs7011095	0.83[CEU][hapmap]
rs7014398	0.84[EUR][1000 genomes]
rs72647424	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72647425	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72647434	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72647435	0.81[EUR][1000 genomes]
rs72647437	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7817515	0.84[EUR][1000 genomes]
rs7825996	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs7827910	0.83[CEU][hapmap]
rs8192870	0.88[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs9297995	0.86[EUR][1000 genomes]
rs9297997	0.82[CEU][hapmap]
rs9297999	0.82[CEU][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv6212	chr8:59435671-59451750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59435400-59442400	Weak transcription	Gastric	stomach
2	chr8:59439000-59439800	Enhancers	Left Ventricle	heart
3	chr8:59439200-59439800	Enhancers	Placenta	Placenta
4	chr8:59439200-59441400	Enhancers	Hela-S3	cervix
5	chr8:59439600-59439800	ZNF genes & repeats	Aorta	Aorta
6	chr8:59439600-59439800	Enhancers	Right Atrium	heart
7	chr8:59439600-59440400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:59439600-59440800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr8:59439600-59441200	Enhancers	Fetal Heart	heart
10	chr8:59439600-59442000	Weak transcription	Placenta Amnion	Placenta Amnion

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