Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr8:59411720-59412110	HepG2	liver:	n/a	n/a
2	ARID3A	chr8:59411901-59412208	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000254103	TF binding region

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10100873	0.80[ASN][1000 genomes]
rs10106272	0.82[ASN][1000 genomes]
rs10107182	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10110065	0.80[ASN][1000 genomes]
rs1030431	0.83[CEU][hapmap]
rs10504255	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1050488	0.87[MEX][hapmap]
rs1050504	0.87[MEX][hapmap]
rs11775194	0.88[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs11996829	0.83[CEU][hapmap]
rs12542233	0.81[TSI][hapmap]
rs12678669	0.80[ASN][1000 genomes]
rs12679938	0.88[CHB][hapmap];0.83[CHD][hapmap];0.81[MEX][hapmap]
rs13263105	0.83[CEU][hapmap]
rs13277801	0.83[CEU][hapmap];0.87[MEX][hapmap]
rs1457043	0.81[TSI][hapmap]
rs1580180	0.83[EUR][1000 genomes]
rs1993453	0.83[CEU][hapmap]
rs2016886	0.83[CEU][hapmap]
rs2081687	0.83[EUR][1000 genomes]
rs2326077	0.82[EUR][1000 genomes]
rs3808607	0.80[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs3816846	0.81[MEX][hapmap]
rs3824260	0.80[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs4738684	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4738685	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471717	0.82[EUR][1000 genomes]
rs6982486	0.83[CEU][hapmap]
rs7005978	0.82[EUR][1000 genomes]
rs7007181	1.00[ASW][hapmap];0.83[CEU][hapmap];0.87[MEX][hapmap];0.80[YRI][hapmap]
rs7018333	0.87[EUR][1000 genomes]
rs72647424	0.80[ASN][1000 genomes]
rs72647425	0.80[ASN][1000 genomes]
rs8192871	0.81[TSI][hapmap]
rs9297994	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9297999	0.87[MEX][hapmap]
rs983812	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59410000-59415200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:59411400-59412600	Active TSS	Liver	Liver
3	chr8:59411800-59413800	Enhancers	HepG2	liver
4	chr8:59411800-59418400	Weak transcription	Psoas Muscle	Psoas

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