Variant report

Variant	rs10504255
Chromosome Location	chr8:59398461-59398462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10107182	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1030431	0.87[CEU][hapmap]
rs1050488	0.87[MEX][hapmap]
rs1050504	0.87[MEX][hapmap]
rs11783515	0.86[JPT][hapmap]
rs11996829	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs12679938	0.81[MEX][hapmap]
rs13263105	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs13277801	0.87[CEU][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[EUR][1000 genomes]
rs1580180	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1993453	0.87[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs2016886	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs2081687	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2326077	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3816846	0.81[MEX][hapmap]
rs4738679	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4738680	0.82[EUR][1000 genomes]
rs4738684	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4738685	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6471717	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6982486	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs6985620	0.82[EUR][1000 genomes]
rs7005978	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7007181	1.00[ASW][hapmap];0.87[CEU][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs7018333	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7826120	0.82[EUR][1000 genomes]
rs8192870	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9297994	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9297999	0.87[MEX][hapmap]
rs983812	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59395600-59401600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:59397200-59399600	Enhancers	Liver	Liver
3	chr8:59397800-59398600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:59397800-59399000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:59398200-59399200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:59398400-59399000	Enhancers	Fetal Heart	heart

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