Variant report

Variant	rs7826120
Chromosome Location	chr8:59371725-59371726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59371203..59372638-chr8:59447082..59447994,4	MCF-7	breast:
2	chr8:59371400..59372798-chr8:59425500..59426400,6	MCF-7	breast:
3	chr8:59371505..59373011-chr8:59425261..59426543,6	MCF-7	breast:
4	chr8:59367078..59369146-chr8:59370552..59372285,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10107182	0.84[EUR][1000 genomes]
rs1030431	0.92[CEU][hapmap]
rs10504255	0.82[EUR][1000 genomes]
rs10957054	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11783515	1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[EUR][1000 genomes]
rs11996829	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13253288	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13263105	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13277801	0.90[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529367	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1529368	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1580180	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1993453	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2016886	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2081687	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2326077	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4738679	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738680	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738684	0.83[EUR][1000 genomes]
rs6471717	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6982486	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6985620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005978	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7007181	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192870	0.87[CEU][hapmap]
rs9297994	0.85[EUR][1000 genomes]
rs983812	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59368400-59376400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:59369600-59372200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:59369600-59372200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:59369600-59372400	Enhancers	HMEC	breast
5	chr8:59370000-59372200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:59371000-59372000	Weak transcription	Liver	Liver
7	chr8:59371200-59372200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:59371200-59372400	Enhancers	NHEK	skin

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