Variant report

Variant	rs1993453
Chromosome Location	chr8:59347184-59347185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP7A1-5	chr8:59347117-59347370	l_3605_chr8:59334565-59347370_testes

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10107182	0.83[EUR][1000 genomes]
rs1030431	1.00[CEU][hapmap]
rs10504255	0.81[EUR][1000 genomes]
rs10957054	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11783515	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11996829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13253288	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13263105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13277801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529367	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1529368	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1580180	0.90[EUR][1000 genomes]
rs2016886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2081687	0.90[EUR][1000 genomes]
rs2326077	0.91[EUR][1000 genomes]
rs4738679	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4738680	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4738684	0.82[EUR][1000 genomes]
rs6471717	0.92[EUR][1000 genomes]
rs6982486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6985620	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7005978	0.91[EUR][1000 genomes]
rs7007181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7826120	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8192870	0.83[CEU][hapmap]
rs9297994	0.84[EUR][1000 genomes]
rs983812	0.91[EUR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59324800-59352000	Weak transcription	HSMMtube	muscle
2	chr8:59324800-59362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:59325000-59348800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:59325000-59352600	Weak transcription	Fetal Kidney	kidney
5	chr8:59325000-59357600	Weak transcription	NHLF	lung
6	chr8:59325000-59360000	Weak transcription	Right Ventricle	heart
7	chr8:59325000-59361200	Weak transcription	Psoas Muscle	Psoas
8	chr8:59325200-59351200	Weak transcription	K562	blood
9	chr8:59325200-59370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:59325400-59349000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:59325400-59351400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:59325600-59348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:59325600-59348800	Weak transcription	Brain Angular Gyrus	brain
14	chr8:59325800-59347600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr8:59325800-59353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr8:59325800-59363200	Weak transcription	Hela-S3	cervix
17	chr8:59326600-59348800	Weak transcription	Small Intestine	intestine
18	chr8:59326600-59353400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr8:59326600-59361400	Weak transcription	Fetal Brain Male	brain
20	chr8:59326600-59366200	Weak transcription	Gastric	stomach
21	chr8:59327000-59352600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr8:59332200-59349000	Weak transcription	HSMM	muscle
23	chr8:59332400-59347400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr8:59332600-59347400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr8:59332600-59352600	Weak transcription	Brain Substantia Nigra	brain
26	chr8:59332600-59354200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:59332600-59364800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr8:59334400-59364200	Weak transcription	HMEC	breast
29	chr8:59334600-59354200	Weak transcription	NHEK	skin
30	chr8:59335000-59356400	Weak transcription	Stomach Mucosa	stomach
31	chr8:59335200-59352800	Weak transcription	Colonic Mucosa	Colon
32	chr8:59335800-59347200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr8:59335800-59349000	Weak transcription	A549	lung
34	chr8:59335800-59354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:59336000-59347400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr8:59336000-59347800	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:59336000-59349000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:59336000-59349000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr8:59336000-59352800	Weak transcription	Placenta	Placenta
40	chr8:59336000-59354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr8:59336000-59361400	Weak transcription	Spleen	Spleen
42	chr8:59336000-59364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr8:59336000-59366600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr8:59336600-59360800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr8:59337800-59363200	Weak transcription	Pancreas	Pancrea
46	chr8:59338000-59347200	Weak transcription	Left Ventricle	heart
47	chr8:59338000-59349000	Weak transcription	Aorta	Aorta
48	chr8:59338200-59348000	Weak transcription	Fetal Brain Female	brain
49	chr8:59338200-59348600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr8:59338400-59347800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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