Variant report

Variant	rs13277801
Chromosome Location	chr8:59353534-59353535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59322895..59325510-chr8:59352539..59354689,2	K562	blood:

Variant related genes	Relation type
ENSG00000215114	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10107182	0.83[EUR][1000 genomes]
rs1030431	1.00[CEU][hapmap]
rs10504255	0.81[EUR][1000 genomes]
rs10957054	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11783515	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11996829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13253288	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13263105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1529367	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1529368	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1580180	0.90[EUR][1000 genomes]
rs1993453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2016886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2081687	0.90[EUR][1000 genomes]
rs2326077	0.91[EUR][1000 genomes]
rs4738679	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4738680	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4738684	0.82[EUR][1000 genomes]
rs6471717	0.92[EUR][1000 genomes]
rs6982486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6985620	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7005978	0.91[EUR][1000 genomes]
rs7007181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7826120	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8192870	0.83[CEU][hapmap];0.87[MEX][hapmap]
rs9297994	0.84[EUR][1000 genomes]
rs983812	0.91[EUR][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59324800-59362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:59325000-59357600	Weak transcription	NHLF	lung
3	chr8:59325000-59360000	Weak transcription	Right Ventricle	heart
4	chr8:59325000-59361200	Weak transcription	Psoas Muscle	Psoas
5	chr8:59325200-59370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:59325800-59363200	Weak transcription	Hela-S3	cervix
7	chr8:59326600-59361400	Weak transcription	Fetal Brain Male	brain
8	chr8:59326600-59366200	Weak transcription	Gastric	stomach
9	chr8:59332600-59354200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:59332600-59364800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:59334400-59364200	Weak transcription	HMEC	breast
12	chr8:59334600-59354200	Weak transcription	NHEK	skin
13	chr8:59335000-59356400	Weak transcription	Stomach Mucosa	stomach
14	chr8:59335800-59354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:59336000-59354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr8:59336000-59361400	Weak transcription	Spleen	Spleen
17	chr8:59336000-59364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:59336000-59366600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr8:59336600-59360800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:59337800-59363200	Weak transcription	Pancreas	Pancrea
21	chr8:59338600-59354600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr8:59339400-59354000	Weak transcription	Fetal Intestine Large	intestine
23	chr8:59339600-59363400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr8:59340000-59353600	Weak transcription	Esophagus	oesophagus
25	chr8:59340000-59354400	Weak transcription	Colon Smooth Muscle	Colon
26	chr8:59340600-59354400	Strong transcription	Primary B cells from cord blood	blood
27	chr8:59342200-59354400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:59342200-59355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:59342200-59366200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr8:59342400-59365400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr8:59343000-59354200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr8:59343400-59353600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr8:59343600-59354400	Weak transcription	Fetal Heart	heart
34	chr8:59343600-59357600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr8:59344000-59354000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:59344400-59355800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr8:59345600-59354200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr8:59347400-59354400	Weak transcription	HepG2	liver
39	chr8:59349200-59354200	Weak transcription	Small Intestine	intestine
40	chr8:59349400-59353600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr8:59349600-59354200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr8:59349600-59354400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr8:59349600-59361600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr8:59349800-59354200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr8:59349800-59354200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:59349800-59354200	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:59349800-59354400	Weak transcription	HSMM	muscle
48	chr8:59349800-59370800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:59350000-59354200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr8:59350200-59355600	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links