Variant report

Variant	rs10107182
Chromosome Location	chr8:59392737-59392738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1030431	0.91[CEU][hapmap]
rs10504255	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1050488	0.87[MEX][hapmap]
rs1050504	0.87[MEX][hapmap]
rs11783515	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs11996829	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs11998699	1.00[YRI][hapmap]
rs12679938	1.00[ASW][hapmap];0.81[MEX][hapmap]
rs13263105	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs13277801	0.91[CEU][hapmap];0.80[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.83[EUR][1000 genomes]
rs1580180	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1993453	0.91[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2016886	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs2081687	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2326077	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3816846	0.81[MEX][hapmap]
rs4738679	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4738680	0.84[EUR][1000 genomes]
rs4738684	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738685	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6471717	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6982486	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs6985620	0.84[EUR][1000 genomes]
rs7005978	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7007181	0.91[CEU][hapmap];0.80[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs7018333	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7826120	0.84[EUR][1000 genomes]
rs8192870	0.91[CEU][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9297994	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297999	0.87[MEX][hapmap]
rs983812	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59391200-59395000	Enhancers	Liver	Liver
2	chr8:59391800-59393800	Enhancers	HepG2	liver
3	chr8:59392400-59393200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:59392600-59393000	Weak transcription	Pancreas	Pancrea
5	chr8:59392600-59393200	Enhancers	Fetal Heart	heart
6	chr8:59392600-59393400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links