Variant report

Variant	rs13263105
Chromosome Location	chr8:59325595-59325596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59321605..59324137-chr8:59325281..59327832,3	K562	blood:
2	chr8:59323416..59326297-chr8:59327025..59332667,5	K562	blood:
3	chr8:59325247..59326918-chr8:59332690..59334959,2	K562	blood:
4	chr8:59323669..59325848-chr8:59328991..59330668,2	K562	blood:
5	chr8:59323970..59326918-chr8:59333459..59336402,2	K562	blood:
6	chr8:59311092..59312732-chr8:59325481..59327752,2	K562	blood:

Variant related genes	Relation type
ENSG00000215114	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1030431	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs10957054	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783515	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11996829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13253288	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13277801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1529367	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529368	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580180	0.84[EUR][1000 genomes]
rs1993453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2016886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081687	0.84[EUR][1000 genomes]
rs2326077	0.85[EUR][1000 genomes]
rs4738679	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4738680	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6471717	0.86[EUR][1000 genomes]
rs6982486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985620	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7005978	0.85[EUR][1000 genomes]
rs7007181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826120	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192870	0.83[CEU][hapmap]
rs983812	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757275	chr8:59305290-59342331	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
2	esv2759619	chr8:59305290-59342331	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59324400-59325800	Flanking Active TSS	Duodenum Mucosa	Duodenum
2	chr8:59324400-59326200	Weak transcription	Pancreas	Pancrea
3	chr8:59324400-59326400	Weak transcription	Gastric	stomach
4	chr8:59324400-59335400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:59324400-59335600	Weak transcription	Spleen	Spleen
6	chr8:59324400-59337200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:59324400-59341800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:59324600-59325600	Flanking Active TSS	Liver	Liver
9	chr8:59324600-59325600	Flanking Active TSS	Dnd41	blood
10	chr8:59324600-59325800	Flanking Active TSS	HepG2	liver
11	chr8:59324600-59326400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr8:59324600-59326600	Enhancers	Small Intestine	intestine
13	chr8:59324600-59326800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:59324600-59332000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:59324600-59335000	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:59324600-59335400	Weak transcription	Left Ventricle	heart
17	chr8:59324600-59335600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:59324600-59337400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:59324600-59339200	Weak transcription	Esophagus	oesophagus
20	chr8:59324800-59325600	Enhancers	Primary B cells from peripheral blood	blood
21	chr8:59324800-59325600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:59324800-59325600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr8:59324800-59325600	Enhancers	Fetal Intestine Large	intestine
24	chr8:59324800-59326000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr8:59324800-59326200	Enhancers	Fetal Intestine Small	intestine
26	chr8:59324800-59327000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr8:59324800-59329400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:59324800-59330200	Weak transcription	Placenta	Placenta
29	chr8:59324800-59330800	Weak transcription	HSMM	muscle
30	chr8:59324800-59333600	Weak transcription	NHDF-Ad	bronchial
31	chr8:59324800-59337400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:59324800-59337400	Weak transcription	Fetal Stomach	stomach
33	chr8:59324800-59352000	Weak transcription	HSMMtube	muscle
34	chr8:59324800-59362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr8:59325000-59325600	Enhancers	Primary T cells from cord blood	blood
36	chr8:59325000-59325600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr8:59325000-59325600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:59325000-59325600	Enhancers	Brain Substantia Nigra	brain
39	chr8:59325000-59325600	Flanking Active TSS	Fetal Brain Female	brain
40	chr8:59325000-59325600	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr8:59325000-59325600	Enhancers	Thymus	Thymus
42	chr8:59325000-59325800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr8:59325000-59325800	Enhancers	Fetal Heart	heart
44	chr8:59325000-59326400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:59325000-59326600	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr8:59325000-59327000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr8:59325000-59327000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr8:59325000-59329400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr8:59325000-59329800	Weak transcription	Adipose Nuclei	Adipose
50	chr8:59325000-59329800	Weak transcription	Fetal Thymus	thymus

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