Variant report

Variant	rs7844004
Chromosome Location	chr8:124456891-124456892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124428665..124430641-chr8:124455656..124457310,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156795	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10111271	0.90[EUR][1000 genomes]
rs10956126	0.90[EUR][1000 genomes]
rs10956131	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11774702	0.82[EUR][1000 genomes]
rs11776589	0.86[EUR][1000 genomes]
rs11783637	0.89[EUR][1000 genomes]
rs11787093	0.85[EUR][1000 genomes]
rs12543979	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12707901	0.83[EUR][1000 genomes]
rs13266016	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3779985	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3779989	0.85[EUR][1000 genomes]
rs3779991	0.82[EUR][1000 genomes]
rs3857957	0.83[EUR][1000 genomes]
rs4870851	0.82[EUR][1000 genomes]
rs4871366	0.88[EUR][1000 genomes]
rs4871367	0.88[EUR][1000 genomes]
rs4871368	0.88[EUR][1000 genomes]
rs4871370	0.90[EUR][1000 genomes]
rs4871371	0.90[EUR][1000 genomes]
rs4871373	0.90[EUR][1000 genomes]
rs4871377	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62519216	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6470146	0.82[EUR][1000 genomes]
rs6981304	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6986525	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6986901	0.86[EUR][1000 genomes]
rs6987599	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7012343	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7817573	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7833321	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7836626	0.85[EUR][1000 genomes]
rs7836880	0.85[EUR][1000 genomes]
rs7840703	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124430200-124472800	Weak transcription	Colonic Mucosa	Colon
2	chr8:124430200-124484600	Weak transcription	Psoas Muscle	Psoas
3	chr8:124430600-124461800	Weak transcription	Fetal Brain Male	brain
4	chr8:124431200-124460200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:124431200-124462200	Weak transcription	Fetal Heart	heart
6	chr8:124436600-124464400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:124437600-124462400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:124441400-124460200	Weak transcription	Stomach Mucosa	stomach
9	chr8:124441600-124461600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:124441600-124462600	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:124442600-124458600	Weak transcription	Hela-S3	cervix
12	chr8:124445600-124465400	Weak transcription	Pancreas	Pancrea
13	chr8:124447600-124467800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:124449400-124457400	Strong transcription	Fetal Stomach	stomach
15	chr8:124449600-124457200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:124449600-124490800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:124450200-124460800	Weak transcription	NHDF-Ad	bronchial
18	chr8:124450400-124461600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:124450600-124460200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:124451400-124489400	Weak transcription	Spleen	Spleen
21	chr8:124452000-124462400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:124452000-124467400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:124453000-124462400	Weak transcription	Right Ventricle	heart
24	chr8:124453400-124458400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:124453400-124458600	Weak transcription	Aorta	Aorta
26	chr8:124453400-124461800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr8:124453600-124464800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:124453800-124458600	Weak transcription	NH-A	brain
29	chr8:124453800-124464000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr8:124454000-124458200	Weak transcription	HUVEC	blood vessel
31	chr8:124454000-124458600	Weak transcription	GM12878-XiMat	blood
32	chr8:124454000-124458800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr8:124454000-124460200	Weak transcription	HMEC	breast
34	chr8:124454000-124462600	Weak transcription	Fetal Lung	lung
35	chr8:124454000-124462800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr8:124454000-124463200	Weak transcription	Brain Anterior Caudate	brain
37	chr8:124454000-124465000	Weak transcription	Brain Angular Gyrus	brain
38	chr8:124454000-124467400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr8:124454000-124467800	Weak transcription	Esophagus	oesophagus
40	chr8:124454000-124468200	Weak transcription	NHLF	lung
41	chr8:124454000-124472800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr8:124454000-124478400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr8:124454000-124489400	Weak transcription	Gastric	stomach
44	chr8:124454200-124458000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr8:124454200-124458200	Weak transcription	Dnd41	blood
46	chr8:124454200-124458400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:124454200-124458600	Weak transcription	Ovary	ovary
48	chr8:124454200-124458800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:124454200-124458800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr8:124454200-124458800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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