Variant report

Variant	rs7844838
Chromosome Location	chr8:102749786-102749787
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102747958..102749864-chr8:102754563..102756568,2	MCF-7	breast:
2	chr8:102748697..102751246-chr8:102767515..102769264,2	MCF-7	breast:
3	chr8:102746868..102749191-chr8:102749399..102751550,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10094868	1.00[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs10808378	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10955275	0.88[ASN][1000 genomes]
rs1111886	0.84[GIH][hapmap]
rs11782123	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs12545537	1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.88[ASN][1000 genomes]
rs12550570	0.81[CHB][hapmap]
rs1573285	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4734593	0.81[GIH][hapmap]
rs7003041	1.00[CEU][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs7008826	0.92[GIH][hapmap]
rs7844292	1.00[CEU][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs9693531	1.00[CHB][hapmap];0.89[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7844838	SNX31	cis	parietal	SCAN
rs7844838	ZFPM2	cis	parietal	SCAN
rs7844838	NCALD	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102730000-102756000	Weak transcription	Psoas Muscle	Psoas
3	chr8:102731600-102752600	Weak transcription	Aorta	Aorta
4	chr8:102732000-102762400	Weak transcription	Lung	lung
5	chr8:102735000-102760600	Weak transcription	Liver	Liver
6	chr8:102735400-102752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:102735400-102757800	Weak transcription	Fetal Stomach	stomach
8	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:102735800-102759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:102738800-102753000	Weak transcription	GM12878-XiMat	blood
12	chr8:102738800-102756800	Weak transcription	Fetal Brain Female	brain
13	chr8:102739200-102749800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:102742200-102759200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:102743600-102750800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:102743800-102761800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:102744400-102752200	Strong transcription	Fetal Muscle Leg	muscle
19	chr8:102745000-102750800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:102746400-102758000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:102746600-102763800	Weak transcription	Left Ventricle	heart
22	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
23	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
24	chr8:102748800-102752200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr8:102749000-102750000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:102749400-102750200	Enhancers	Ovary	ovary

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