Variant report

Variant	rs7003041
Chromosome Location	chr8:102750391-102750392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102748697..102751246-chr8:102767515..102769264,2	MCF-7	breast:
2	chr8:102746868..102749191-chr8:102749399..102751550,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10091905	0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10094894	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10113785	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10216921	0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10505012	0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1077500	0.90[CHB][hapmap]
rs10808377	0.89[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10955274	0.89[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1125334	0.95[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1125335	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12543380	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12550570	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13251735	0.87[MEX][hapmap]
rs13252722	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13265954	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13268186	0.90[CHB][hapmap]
rs13281055	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13281871	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13282456	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1465167	0.89[CHB][hapmap];0.82[CHD][hapmap]
rs1573284	0.87[CHD][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap]
rs1573285	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2032121	0.95[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs2154652	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2186392	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2186393	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2387616	0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2387617	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2387618	0.87[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap]
rs4379418	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4493882	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4734040	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6468792	0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6987380	0.95[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6997574	0.95[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7001437	0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7002547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7013506	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7017754	0.83[GIH][hapmap]
rs7813132	0.82[MEX][hapmap]
rs7830291	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs7844259	0.91[ASN][1000 genomes]
rs7844292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7844599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7844838	1.00[CEU][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs9693504	0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7003041	NCALD	cis	parietal	SCAN
rs7003041	SNX31	cis	parietal	SCAN
rs7003041	ZFPM2	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102730000-102756000	Weak transcription	Psoas Muscle	Psoas
3	chr8:102731600-102752600	Weak transcription	Aorta	Aorta
4	chr8:102732000-102762400	Weak transcription	Lung	lung
5	chr8:102735000-102760600	Weak transcription	Liver	Liver
6	chr8:102735400-102752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:102735400-102757800	Weak transcription	Fetal Stomach	stomach
8	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:102735800-102759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:102738800-102753000	Weak transcription	GM12878-XiMat	blood
12	chr8:102738800-102756800	Weak transcription	Fetal Brain Female	brain
13	chr8:102742200-102759200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:102743600-102750800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:102743800-102761800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:102744400-102752200	Strong transcription	Fetal Muscle Leg	muscle
18	chr8:102745000-102750800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:102746400-102758000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:102746600-102763800	Weak transcription	Left Ventricle	heart
21	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
22	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
23	chr8:102748800-102752200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr8:102749800-102750400	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:102750000-102750400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:102750200-102757600	Weak transcription	Ovary	ovary

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