Variant report

Variant	rs7830291
Chromosome Location	chr8:102799494-102799495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10091905	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10094868	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10094894	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10113785	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10216921	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10505012	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1073373	0.96[CEU][hapmap]
rs1074703	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1077500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077998	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10808377	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10808378	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10808379	0.83[CEU][hapmap]
rs10955274	0.95[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10955275	0.92[EUR][1000 genomes]
rs1111884	1.00[CEU][hapmap]
rs1111886	0.96[CEU][hapmap]
rs1125334	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1125335	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11782123	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs12334693	0.83[CEU][hapmap]
rs12543380	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12545537	1.00[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs12550570	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1264933	0.83[CEU][hapmap]
rs12677525	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs13251735	0.83[CEU][hapmap];0.90[CHD][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13252722	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13265954	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13268186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13281055	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13281871	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13282456	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1465167	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557336	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs1573284	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs17406994	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1893366	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs2004556	0.87[EUR][1000 genomes]
rs2032121	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2154652	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2155942	0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2186392	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2186393	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2212701	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2387616	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2387617	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2387618	1.00[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs2387619	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs28837777	0.89[EUR][1000 genomes]
rs2892324	0.95[CEU][hapmap]
rs4379418	0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4493882	0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4576401	0.89[EUR][1000 genomes]
rs4734040	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4734593	1.00[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs4734594	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4734595	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4734596	0.83[EUR][1000 genomes]
rs4734597	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6468792	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6468793	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs6468794	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs6468795	0.96[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs6468796	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs6468798	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs6468799	0.96[CEU][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs6468801	0.87[CHD][hapmap]
rs6987380	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6988793	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs6997574	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7000357	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7001437	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7002547	0.95[CEU][hapmap];0.89[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7003041	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs7008826	0.91[CEU][hapmap]
rs7009385	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7011941	0.94[ASW][hapmap];0.88[CEU][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7012512	0.95[CEU][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes]
rs7013506	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7015311	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7017754	0.96[CEU][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.84[EUR][1000 genomes]
rs7812876	0.84[EUR][1000 genomes]
rs7813132	0.81[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7827691	0.83[CEU][hapmap]
rs7827941	0.84[CHD][hapmap]
rs7835223	0.88[CEU][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7835485	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7838696	0.83[CEU][hapmap]
rs7844292	0.90[CHB][hapmap]
rs7844599	0.95[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8181022	0.83[CEU][hapmap]
rs8181025	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9297313	0.83[CEU][hapmap]
rs9693504	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9693531	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7830291	FOXL1	trans	parietal	SCAN
rs7830291	NCALD	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102774600-102799600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:102780200-102799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102781600-102801000	Weak transcription	Liver	Liver
5	chr8:102783000-102799600	Weak transcription	Brain Substantia Nigra	brain
6	chr8:102783600-102800800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:102784200-102802200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:102787400-102802400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:102787800-102802600	Weak transcription	Right Ventricle	heart
10	chr8:102790600-102802400	Weak transcription	Left Ventricle	heart
11	chr8:102790600-102802600	Weak transcription	Psoas Muscle	Psoas
12	chr8:102795200-102803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:102796400-102803000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:102796600-102800000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:102796800-102802400	Weak transcription	NHDF-Ad	bronchial
16	chr8:102797000-102799600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:102798200-102800000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr8:102798200-102800200	Enhancers	Fetal Lung	lung
19	chr8:102798600-102800600	Weak transcription	GM12878-XiMat	blood
20	chr8:102798600-102801200	Weak transcription	Right Atrium	heart
21	chr8:102798600-102802000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:102798600-102802000	Weak transcription	Fetal Stomach	stomach
23	chr8:102798600-102802400	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:102798600-102803000	Weak transcription	Pancreas	Pancrea
25	chr8:102798800-102799600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:102798800-102802000	Weak transcription	Fetal Kidney	kidney
27	chr8:102798800-102802400	Weak transcription	Fetal Brain Male	brain
28	chr8:102798800-102802600	Weak transcription	Aorta	Aorta
29	chr8:102799000-102799800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:102799200-102800400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr8:102799400-102799600	Active TSS	Ovary	ovary
32	chr8:102799400-102799800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:102799400-102799800	Active TSS	Adipose Nuclei	Adipose
34	chr8:102799400-102800000	Active TSS	Fetal Muscle Leg	muscle
35	chr8:102799400-102800200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:102799400-102800400	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr8:102799400-102800400	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr8:102799400-102801400	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links