Variant report

Variant	rs7009385
Chromosome Location	chr8:102806394-102806395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MEF2C	chr8:102805594-102806444	GM12878	blood:	n/a	chr8:102805986-102806001 chr8:102806040-102806056 chr8:102806039-102806060 chr8:102805988-102806002 chr8:102806044-102806053 chr8:102806041-102806056 chr8:102805974-102805989
2	NFIC	chr8:102805582-102806405	GM12878	blood:	n/a	n/a
3	NFIC	chr8:102805509-102806424	GM12878	blood:	n/a	n/a
4	MTA3	chr8:102805525-102806411	GM12878	blood:	n/a	n/a
5	CEBPB	chr8:102805580-102806403	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102805837..102808016-chr8:102809484..102812938,3	MCF-7	breast:

Variant related genes	Relation type
NCALD	TF binding region

Extended variants
information (count: 95 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10091905	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10094868	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10094894	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10113785	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10216921	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10505012	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1073373	0.96[CEU][hapmap]
rs1074703	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1077500	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1077998	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10808377	1.00[CEU][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10808378	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10808379	0.83[CEU][hapmap];0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs10955274	0.95[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10955275	0.92[EUR][1000 genomes]
rs1111884	1.00[CEU][hapmap]
rs1111886	0.96[CEU][hapmap]
rs1125334	0.96[CEU][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1125335	0.91[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11782123	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs12334693	0.83[CEU][hapmap]
rs12543380	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12545537	1.00[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs12550570	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1264933	0.83[CEU][hapmap]
rs12677525	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs13251735	0.83[CEU][hapmap];0.95[CHD][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13252722	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13265954	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13268186	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13281055	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13281871	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13282456	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1465167	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1557336	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs1573284	0.96[CEU][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs17406994	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1893366	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs2004556	0.87[EUR][1000 genomes]
rs2032121	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2154652	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2155942	0.83[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2186392	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2186393	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2212701	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2387616	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2387617	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2387618	1.00[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs2387619	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs28837777	0.89[EUR][1000 genomes]
rs2892324	0.95[CEU][hapmap]
rs4379418	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4493882	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4576401	0.89[EUR][1000 genomes]
rs4734040	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4734593	1.00[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs4734594	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4734595	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4734596	0.83[EUR][1000 genomes]
rs4734597	0.89[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6468792	0.96[CEU][hapmap];0.82[CHD][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6468793	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs6468794	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs6468795	0.96[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs6468796	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs6468798	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs6468799	0.96[CEU][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs6468801	0.89[CHB][hapmap];0.92[CHD][hapmap];0.83[ASN][1000 genomes]
rs6987380	0.96[CEU][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6988793	1.00[CEU][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs6997574	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7000357	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7001437	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7002547	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7008826	0.91[CEU][hapmap]
rs7011941	0.88[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7012512	0.95[CEU][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes]
rs7013506	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7015311	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7017754	0.96[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.84[EUR][1000 genomes]
rs7812876	0.84[EUR][1000 genomes]
rs7813132	0.81[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]
rs7827304	0.83[CHB][hapmap]
rs7827691	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs7827941	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs7830291	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7835223	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7835485	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7838696	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs7844599	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8181022	0.83[CEU][hapmap]
rs8181025	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9297313	0.83[CEU][hapmap]
rs9693504	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9693531	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7009385	C8orf56	cis	parietal	SCAN
rs7009385	NCALD	cis	parietal	SCAN
rs7009385	FOXL1	trans	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803200-102817800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:102804200-102807400	Weak transcription	Fetal Brain Male	brain
4	chr8:102805600-102806600	Flanking Active TSS	GM12878-XiMat	blood
5	chr8:102806200-102806400	Enhancers	Small Intestine	intestine

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