Variant report

Variant	rs6468794
Chromosome Location	chr8:102805816-102805817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr8:102805751-102806257	GM12878	blood:	n/a	n/a
2	RCOR1	chr8:102805625-102806255	GM12878	blood:	n/a	n/a
3	STAT3	chr8:102805792-102806066	GM12878	blood:	n/a	n/a
4	BCLAF1	chr8:102805713-102806209	GM12878	blood:	n/a	n/a
5	FOXM1	chr8:102805523-102806388	GM12878	blood:	n/a	n/a
6	PML	chr8:102805578-102806319	GM12878	blood:	n/a	n/a
7	MEF2C	chr8:102805594-102806444	GM12878	blood:	n/a	chr8:102805986-102806001 chr8:102806040-102806056 chr8:102806039-102806060 chr8:102805988-102806002 chr8:102806044-102806053 chr8:102806041-102806056 chr8:102805974-102805989
8	TBP	chr8:102805729-102805928	GM12878	blood:	n/a	n/a
9	BHLHE40	chr8:102805815-102806219	GM12878	blood:	n/a	n/a
10	BCL11A	chr8:102805699-102806277	GM12878	blood:	n/a	n/a
11	BATF	chr8:102805699-102806243	GM12878	blood:	n/a	chr8:102805940-102805949
12	CUX1	chr8:102805728-102806183	GM12878	blood:	n/a	n/a
13	EP300	chr8:102805714-102806272	GM12878	blood:	n/a	chr8:102805737-102805746
14	MTA3	chr8:102805725-102806295	GM12878	blood:	n/a	n/a
15	RUNX3	chr8:102805618-102806350	GM12878	blood:	n/a	n/a
16	TBL1XR1	chr8:102805713-102806277	GM12878	blood:	n/a	n/a
17	FOXM1	chr8:102805693-102806366	GM12878	blood:	n/a	n/a
18	NFIC	chr8:102805582-102806405	GM12878	blood:	n/a	n/a
19	STAT5A	chr8:102805705-102806291	GM12878	blood:	n/a	n/a
20	ATF2	chr8:102805711-102806286	GM12878	blood:	n/a	n/a
21	BCLAF1	chr8:102805572-102806327	GM12878	blood:	n/a	n/a
22	RUNX3	chr8:102805492-102806370	GM12878	blood:	n/a	n/a
23	PAX5	chr8:102805717-102805971	GM12878	blood:	n/a	n/a
24	NFIC	chr8:102805509-102806424	GM12878	blood:	n/a	n/a
25	NFATC1	chr8:102805614-102806293	GM12878	blood:	n/a	n/a
26	EBF1	chr8:102805744-102806103	GM12878	blood:	n/a	n/a
27	MTA3	chr8:102805525-102806411	GM12878	blood:	n/a	n/a
28	ATF2	chr8:102805572-102806356	GM12878	blood:	n/a	n/a
29	EP300	chr8:102805774-102806235	GM12878	blood:	n/a	n/a
30	MEF2A	chr8:102805459-102806382	GM12878	blood:	n/a	chr8:102806040-102806056 chr8:102806039-102806060 chr8:102805988-102806002 chr8:102806044-102806053 chr8:102806041-102806056 chr8:102805974-102805989
31	CEBPB	chr8:102805580-102806403	GM12878	blood:	n/a	n/a
32	MXI1	chr8:102805777-102806228	GM12878	blood:	n/a	n/a
33	PAX5	chr8:102805599-102806152	GM12891	blood:	n/a	n/a
34	MEF2C	chr8:102805777-102806237	GM12878	blood:	n/a	chr8:102805986-102806001 chr8:102806040-102806056 chr8:102806039-102806060 chr8:102805988-102806002 chr8:102806044-102806053 chr8:102806041-102806056 chr8:102805974-102805989
35	BCL3	chr8:102805679-102806288	GM12878	blood:	n/a	n/a
36	SMC3	chr8:102805723-102806306	GM12878	blood:	n/a	n/a
37	MEF2A	chr8:102805516-102806376	GM12878	blood:	n/a	chr8:102806040-102806056 chr8:102806039-102806060 chr8:102805988-102806002 chr8:102806044-102806053 chr8:102806041-102806056 chr8:102805974-102805989
38	NFATC1	chr8:102805714-102806314	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102788961..102790963-chr8:102804274..102805896,2	MCF-7	breast:
2	chr8:102794874..102797295-chr8:102804116..102805883,2	MCF-7	breast:

Variant related genes	Relation type
NCALD	TF binding region

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10091905	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10094868	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10094894	0.81[EUR][1000 genomes]
rs10113785	0.81[EUR][1000 genomes]
rs10216921	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10505012	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs1073373	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1077500	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1077998	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs10808377	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10808378	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs10808379	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs10955274	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10955275	0.81[EUR][1000 genomes]
rs1111884	0.96[CEU][hapmap]
rs1111886	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1125334	0.92[CEU][hapmap]
rs1125335	0.87[CEU][hapmap]
rs11782123	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12334693	0.88[CEU][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12543380	0.80[EUR][1000 genomes]
rs12545537	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs12550570	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs1264930	0.83[CEU][hapmap]
rs1264933	0.88[CEU][hapmap]
rs12677525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13251735	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs13255004	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13265954	0.81[EUR][1000 genomes]
rs13267715	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13268186	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs13281055	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs13281871	0.81[EUR][1000 genomes]
rs13282456	0.81[EUR][1000 genomes]
rs1465167	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1557336	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1573284	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs17406994	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1893366	0.88[CEU][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2004556	0.84[EUR][1000 genomes]
rs2032121	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs2154652	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2155938	0.83[CEU][hapmap]
rs2155943	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2186392	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2186393	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2212701	0.89[EUR][1000 genomes]
rs2226724	0.83[CEU][hapmap];0.90[YRI][hapmap];0.84[EUR][1000 genomes]
rs2226725	0.89[EUR][1000 genomes]
rs2387616	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2387617	0.81[EUR][1000 genomes]
rs2387618	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2387619	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs28837777	1.00[EUR][1000 genomes]
rs2892324	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4379418	0.81[EUR][1000 genomes]
rs4493882	0.81[EUR][1000 genomes]
rs4576401	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4734040	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs4734593	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4734594	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4734595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734596	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4734597	0.82[EUR][1000 genomes]
rs6468792	0.92[CEU][hapmap]
rs6468793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6468795	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6468796	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6468798	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs6468799	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6468801	0.85[EUR][1000 genomes]
rs6984260	0.83[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6987380	0.92[CEU][hapmap]
rs6988793	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6993577	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6997574	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs7000357	0.84[CEU][hapmap]
rs7001437	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs7002547	0.96[CEU][hapmap]
rs7008826	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7009385	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7011941	0.84[CEU][hapmap]
rs7012512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015311	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7017754	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7812876	0.80[EUR][1000 genomes]
rs7813132	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7827304	0.81[EUR][1000 genomes]
rs7827691	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7827941	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs7830291	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7835223	0.84[CEU][hapmap]
rs7835485	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7838696	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs7844599	0.91[CEU][hapmap]
rs8181022	0.88[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8181025	0.84[CEU][hapmap]
rs9297313	0.88[CEU][hapmap]
rs9693504	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs9693531	0.96[CEU][hapmap];0.81[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803200-102817800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:102804200-102806000	Weak transcription	Ovary	ovary
4	chr8:102804200-102807400	Weak transcription	Fetal Brain Male	brain
5	chr8:102805600-102806600	Flanking Active TSS	GM12878-XiMat	blood

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