Variant report

Variant	rs2226725
Chromosome Location	chr8:102829210-102829211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1074703	0.82[EUR][1000 genomes]
rs10808379	0.98[EUR][1000 genomes]
rs1111886	0.80[EUR][1000 genomes]
rs12334693	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12544026	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12677525	0.88[EUR][1000 genomes]
rs13251735	0.95[EUR][1000 genomes]
rs13255004	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13267715	0.80[EUR][1000 genomes]
rs1557336	0.80[EUR][1000 genomes]
rs17406994	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1893366	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155942	0.85[EUR][1000 genomes]
rs2155943	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2226724	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28837777	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2892324	0.80[EUR][1000 genomes]
rs4576401	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734595	0.84[EUR][1000 genomes]
rs4734596	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4734597	0.86[EUR][1000 genomes]
rs6468793	0.88[EUR][1000 genomes]
rs6468794	0.89[EUR][1000 genomes]
rs6468795	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6468796	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6468798	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6468799	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6468801	0.95[EUR][1000 genomes]
rs6984260	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6993577	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7000357	0.89[EUR][1000 genomes]
rs7011941	0.89[EUR][1000 genomes]
rs7012512	0.89[EUR][1000 genomes]
rs7015311	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7813132	0.91[EUR][1000 genomes]
rs7827304	0.91[EUR][1000 genomes]
rs7827691	0.94[EUR][1000 genomes]
rs7827941	0.91[EUR][1000 genomes]
rs7835223	0.88[EUR][1000 genomes]
rs7838696	1.00[EUR][1000 genomes]
rs8181022	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8181025	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102817800-102829400	Weak transcription	Ovary	ovary
3	chr8:102828200-102829400	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:102828200-102829800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:102828400-102832600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:102829000-102829400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:102829000-102829400	Enhancers	Brain Substantia Nigra	brain
8	chr8:102829000-102829600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:102829000-102829800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:102829000-102829800	Enhancers	Brain Cingulate Gyrus	brain
11	chr8:102829000-102830800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:102829200-102829400	Enhancers	Brain Angular Gyrus	brain
13	chr8:102829200-102829400	Enhancers	Brain Hippocampus Middle	brain
14	chr8:102829200-102829600	Flanking Active TSS	Brain Anterior Caudate	brain

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