Variant report

Variant	rs13267715
Chromosome Location	chr8:102761135-102761136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102751290..102754667-chr8:102759250..102762937,3	MCF-7	breast:
2	chr8:102759103..102761260-chr8:102764517..102767172,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10091905	0.88[EUR][1000 genomes]
rs10094868	0.88[EUR][1000 genomes]
rs10094894	0.88[EUR][1000 genomes]
rs10113785	0.90[EUR][1000 genomes]
rs10216921	0.88[EUR][1000 genomes]
rs10505012	0.89[EUR][1000 genomes]
rs1073373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077998	0.92[EUR][1000 genomes]
rs10808377	0.88[EUR][1000 genomes]
rs10808378	0.88[EUR][1000 genomes]
rs10955274	0.97[EUR][1000 genomes]
rs10955275	0.88[EUR][1000 genomes]
rs1111886	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1125334	0.86[EUR][1000 genomes]
rs1125335	0.86[EUR][1000 genomes]
rs11782123	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12334693	0.83[EUR][1000 genomes]
rs12543380	0.89[EUR][1000 genomes]
rs12545537	0.88[EUR][1000 genomes]
rs12550570	0.89[EUR][1000 genomes]
rs12677525	0.91[EUR][1000 genomes]
rs13252722	0.86[EUR][1000 genomes]
rs13265954	0.90[EUR][1000 genomes]
rs13268186	0.84[EUR][1000 genomes]
rs13281055	0.89[EUR][1000 genomes]
rs13281871	0.90[EUR][1000 genomes]
rs13282456	0.90[EUR][1000 genomes]
rs1557336	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1573284	0.89[EUR][1000 genomes]
rs17406994	0.91[EUR][1000 genomes]
rs2004556	0.92[EUR][1000 genomes]
rs2032121	0.89[EUR][1000 genomes]
rs2154652	0.88[EUR][1000 genomes]
rs2186392	0.88[EUR][1000 genomes]
rs2186393	0.88[EUR][1000 genomes]
rs2226725	0.80[EUR][1000 genomes]
rs2387616	0.88[EUR][1000 genomes]
rs2387617	0.88[EUR][1000 genomes]
rs2387618	0.92[EUR][1000 genomes]
rs2387619	0.92[EUR][1000 genomes]
rs28837777	0.91[EUR][1000 genomes]
rs2892324	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4379418	0.88[EUR][1000 genomes]
rs4493882	0.88[EUR][1000 genomes]
rs4576401	0.91[EUR][1000 genomes]
rs4734040	0.90[EUR][1000 genomes]
rs4734593	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734594	0.84[EUR][1000 genomes]
rs4734595	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4734596	0.85[EUR][1000 genomes]
rs6468792	0.86[EUR][1000 genomes]
rs6468793	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6468794	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6468795	0.87[EUR][1000 genomes]
rs6468796	0.91[EUR][1000 genomes]
rs6468798	0.90[EUR][1000 genomes]
rs6468799	0.91[EUR][1000 genomes]
rs6987380	0.86[EUR][1000 genomes]
rs6988793	0.84[EUR][1000 genomes]
rs6997574	0.90[EUR][1000 genomes]
rs7001437	0.89[EUR][1000 genomes]
rs7002547	0.86[EUR][1000 genomes]
rs7008826	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012512	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7013506	0.86[EUR][1000 genomes]
rs7015311	0.91[EUR][1000 genomes]
rs7017754	0.95[EUR][1000 genomes]
rs7812876	0.89[EUR][1000 genomes]
rs7835485	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7838696	0.80[EUR][1000 genomes]
rs7844599	0.85[EUR][1000 genomes]
rs9693504	0.87[EUR][1000 genomes]
rs9693531	0.88[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102732000-102762400	Weak transcription	Lung	lung
3	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:102743800-102761800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:102746600-102763800	Weak transcription	Left Ventricle	heart
8	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
9	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
10	chr8:102753400-102761800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:102756000-102762000	Weak transcription	Adipose Nuclei	Adipose
12	chr8:102756200-102763200	Strong transcription	Fetal Muscle Trunk	muscle
13	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
14	chr8:102757000-102763800	Weak transcription	Brain Anterior Caudate	brain
15	chr8:102757200-102763200	Strong transcription	Fetal Muscle Leg	muscle
16	chr8:102757200-102764400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:102758000-102761800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:102758400-102762800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:102758400-102763200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:102758600-102762400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr8:102759400-102763800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:102759800-102763400	Weak transcription	Ovary	ovary
23	chr8:102759800-102767800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:102760600-102761400	Strong transcription	Liver	Liver
25	chr8:102760600-102762600	ZNF genes & repeats	GM12878-XiMat	blood
26	chr8:102761000-102761600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:102761000-102762000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links