Variant report

Variant	rs2892324
Chromosome Location	chr8:102761831-102761832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102751290..102754667-chr8:102759250..102762937,3	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10091905	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10094868	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10094894	0.88[EUR][1000 genomes]
rs10113785	0.90[EUR][1000 genomes]
rs10216921	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10505012	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1073373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077500	0.95[CEU][hapmap]
rs1077998	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs10808377	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10808378	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10808379	0.86[CEU][hapmap]
rs10955274	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10955275	0.88[EUR][1000 genomes]
rs1111884	0.95[CEU][hapmap]
rs1111886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1125334	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs1125335	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs11782123	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12334693	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs12543380	0.89[EUR][1000 genomes]
rs12545537	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs12550570	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1264930	0.85[CEU][hapmap]
rs1264933	0.85[CEU][hapmap]
rs12677525	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13251735	0.85[CEU][hapmap]
rs13252722	0.86[EUR][1000 genomes]
rs13265954	0.90[EUR][1000 genomes]
rs13267715	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268186	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs13281055	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs13281871	0.90[EUR][1000 genomes]
rs13282456	0.90[EUR][1000 genomes]
rs1465167	0.95[CEU][hapmap]
rs1557336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1573284	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs17406994	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1893366	0.85[CEU][hapmap]
rs2004556	0.92[EUR][1000 genomes]
rs2032121	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs2154652	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs2155938	0.85[CEU][hapmap]
rs2155940	0.81[CEU][hapmap]
rs2155941	0.81[CEU][hapmap]
rs2155942	0.81[CEU][hapmap]
rs2186392	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs2186393	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs2226724	0.85[CEU][hapmap]
rs2226725	0.80[EUR][1000 genomes]
rs2387616	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs2387617	0.88[EUR][1000 genomes]
rs2387618	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs2387619	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs28837777	0.91[EUR][1000 genomes]
rs4379418	0.88[EUR][1000 genomes]
rs4493882	0.88[EUR][1000 genomes]
rs4576401	0.91[EUR][1000 genomes]
rs4734040	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs4734593	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734594	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs4734595	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4734596	0.85[EUR][1000 genomes]
rs6468792	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs6468793	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6468794	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6468795	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6468796	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6468798	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6468799	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6984260	0.85[CEU][hapmap]
rs6987380	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs6988793	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs6997574	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs7000357	0.82[CEU][hapmap]
rs7001437	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs7002547	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs7008826	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009385	0.95[CEU][hapmap]
rs7011941	0.82[CEU][hapmap]
rs7012512	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7013506	0.86[EUR][1000 genomes]
rs7015311	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7017754	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7812876	0.89[EUR][1000 genomes]
rs7813132	0.83[CEU][hapmap]
rs7827691	0.86[CEU][hapmap]
rs7827941	0.85[CEU][hapmap]
rs7828175	0.81[CEU][hapmap]
rs7829693	0.80[CEU][hapmap]
rs7830291	0.95[CEU][hapmap]
rs7835223	0.81[CEU][hapmap]
rs7835485	1.00[CEU][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7838696	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs7840760	0.81[CEU][hapmap]
rs7844599	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs8181022	0.86[CEU][hapmap]
rs8181025	0.82[CEU][hapmap]
rs9297313	0.86[CEU][hapmap]
rs9693504	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs9693531	0.95[CEU][hapmap];0.88[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102732000-102762400	Weak transcription	Lung	lung
3	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:102746600-102763800	Weak transcription	Left Ventricle	heart
7	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
8	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
9	chr8:102756000-102762000	Weak transcription	Adipose Nuclei	Adipose
10	chr8:102756200-102763200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
12	chr8:102757000-102763800	Weak transcription	Brain Anterior Caudate	brain
13	chr8:102757200-102763200	Strong transcription	Fetal Muscle Leg	muscle
14	chr8:102757200-102764400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr8:102758400-102762800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:102758400-102763200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:102758600-102762400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr8:102759400-102763800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:102759800-102763400	Weak transcription	Ovary	ovary
20	chr8:102759800-102767800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:102760600-102762600	ZNF genes & repeats	GM12878-XiMat	blood
22	chr8:102761000-102762000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:102761400-102781000	Weak transcription	Liver	Liver
24	chr8:102761800-102763200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:102761800-102763200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
26	chr8:102761800-102763800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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