Variant report

Variant	rs2155941
Chromosome Location	chr8:102847047-102847048
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102841778..102844657-chr8:102844886..102847440,3	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1144545	0.80[CEU][hapmap]
rs1148496	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1148497	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs1148498	0.84[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1148499	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs1148501	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1264865	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1264866	0.83[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1264930	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264931	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1264932	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264933	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264952	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1264953	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1264954	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1272384	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155938	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155939	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155940	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2155942	0.88[CEU][hapmap]
rs2226724	0.92[CEU][hapmap]
rs2509895	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28623673	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2892324	0.81[CEU][hapmap]
rs472471	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs472963	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs477236	0.84[CEU][hapmap]
rs478092	0.83[CEU][hapmap];0.83[AMR][1000 genomes]
rs478875	0.84[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs480570	0.80[CEU][hapmap]
rs480955	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs481545	0.80[CEU][hapmap]
rs484657	0.83[CEU][hapmap]
rs486196	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs488034	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs490032	0.83[CEU][hapmap];0.84[AMR][1000 genomes]
rs490096	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs495636	0.80[CEU][hapmap]
rs497905	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs505460	0.80[AMR][1000 genomes]
rs512202	0.83[CEU][hapmap]
rs519197	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs520880	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs526533	0.88[CEU][hapmap]
rs531624	0.80[CEU][hapmap]
rs534512	0.84[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs537941	0.83[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs539663	0.84[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs544821	0.84[CEU][hapmap]
rs544928	0.84[CEU][hapmap]
rs554036	0.88[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs554945	0.83[CEU][hapmap]
rs558159	0.86[AMR][1000 genomes]
rs558985	0.84[AMR][1000 genomes]
rs561000	0.81[AMR][1000 genomes]
rs563493	0.84[CEU][hapmap]
rs564718	0.83[CEU][hapmap];0.83[AMR][1000 genomes]
rs566264	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs566315	0.80[CEU][hapmap]
rs566501	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs568194	0.80[CEU][hapmap]
rs569015	0.80[CEU][hapmap]
rs572692	0.83[CEU][hapmap];0.83[AMR][1000 genomes]
rs577756	0.80[CEU][hapmap]
rs578603	0.83[CEU][hapmap]
rs67887846	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6984260	0.92[CEU][hapmap]
rs6991592	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7813132	0.86[CEU][hapmap]
rs7827304	0.84[CEU][hapmap]
rs7827941	0.92[CEU][hapmap]
rs7828175	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7828516	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7829693	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7840760	1.00[CEU][hapmap]
rs7842147	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9297313	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102835000-102852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:102838600-102848400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:102842200-102851000	Weak transcription	Fetal Kidney	kidney
5	chr8:102843800-102848000	Enhancers	HMEC	breast
6	chr8:102844200-102847200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr8:102844200-102847400	Weak transcription	Esophagus	oesophagus
8	chr8:102844600-102849400	Weak transcription	Right Ventricle	heart
9	chr8:102845400-102847400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:102845400-102847400	Weak transcription	NHEK	skin
11	chr8:102845400-102847800	Weak transcription	Right Atrium	heart
12	chr8:102845400-102849400	Weak transcription	Fetal Heart	heart
13	chr8:102845400-102862000	Weak transcription	Left Ventricle	heart
14	chr8:102845600-102855000	Weak transcription	Aorta	Aorta
15	chr8:102846800-102849400	Weak transcription	Ovary	ovary
16	chr8:102846800-102851200	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:102846800-102866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:102847000-102847800	Weak transcription	Psoas Muscle	Psoas

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