Variant report

Variant	rs1264932
Chromosome Location	chr8:102853191-102853192
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102847583..102849623-chr8:102851249..102854014,2	MCF-7	breast:
2	chr8:102852494..102855006-chr8:102859200..102861225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238372	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1148496	0.89[ASN][1000 genomes]
rs1148497	0.91[ASN][1000 genomes]
rs1148498	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1148499	0.91[ASN][1000 genomes]
rs1148501	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1264865	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1264866	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1264930	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1264931	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1264933	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1264952	0.91[ASN][1000 genomes]
rs1264953	0.86[ASN][1000 genomes]
rs1264954	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1272384	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2155938	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2155939	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2155940	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2155941	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509895	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28623673	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs472471	0.89[ASN][1000 genomes]
rs472963	0.91[ASN][1000 genomes]
rs478092	0.82[EUR][1000 genomes]
rs478875	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs488034	0.89[ASN][1000 genomes]
rs490096	0.82[EUR][1000 genomes]
rs506026	0.82[EUR][1000 genomes]
rs519197	0.91[ASN][1000 genomes]
rs520880	0.91[ASN][1000 genomes]
rs534512	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs537941	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs539663	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs543897	0.81[EUR][1000 genomes]
rs554945	0.81[EUR][1000 genomes]
rs557654	0.82[EUR][1000 genomes]
rs558159	0.88[AFR][1000 genomes]
rs564718	0.82[EUR][1000 genomes]
rs572692	0.82[EUR][1000 genomes]
rs67887846	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6991592	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7828175	0.89[EUR][1000 genomes]
rs7828516	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7829693	0.93[EUR][1000 genomes]
rs7842147	0.89[EUR][1000 genomes]
rs9297313	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102845400-102862000	Weak transcription	Left Ventricle	heart
3	chr8:102845600-102855000	Weak transcription	Aorta	Aorta
4	chr8:102846800-102866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:102848000-102853400	Weak transcription	Psoas Muscle	Psoas
6	chr8:102848000-102854200	Weak transcription	HMEC	breast
7	chr8:102852000-102854600	Enhancers	GM12878-XiMat	blood
8	chr8:102852200-102854800	Weak transcription	Fetal Muscle Leg	muscle

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