Variant report

Variant	rs67887846
Chromosome Location	chr8:102845578-102845579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59368707..59371111-chr8:102843396..102846308,2	MCF-7	breast:
2	chr8:102843199..102845818-chr8:102888680..102891293,2	MCF-7	breast:
3	chr8:102841778..102844657-chr8:102844886..102847440,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1144545	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1148496	0.95[ASN][1000 genomes]
rs1148497	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1148498	0.90[ASN][1000 genomes]
rs1148499	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1148501	0.89[ASN][1000 genomes]
rs1264865	0.95[ASN][1000 genomes]
rs1264866	0.90[ASN][1000 genomes]
rs1264930	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1264931	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1264932	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1264933	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1264952	0.88[ASN][1000 genomes]
rs1264953	0.83[ASN][1000 genomes]
rs1264954	0.89[ASN][1000 genomes]
rs1272384	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1313944	0.80[AMR][1000 genomes]
rs2155938	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155939	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155940	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2155941	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2509895	0.88[ASN][1000 genomes]
rs28623673	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs472471	0.97[ASN][1000 genomes]
rs472638	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs472963	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs478189	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs478875	0.92[ASN][1000 genomes]
rs478917	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs479041	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs480570	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs480955	0.82[AMR][1000 genomes]
rs481545	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs485252	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs485263	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs485363	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs486196	0.82[AMR][1000 genomes]
rs488034	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs489973	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs494352	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs495636	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs497905	0.80[AMR][1000 genomes]
rs502334	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs513472	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs519197	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs520880	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs526533	0.80[AMR][1000 genomes]
rs529684	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs531624	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs534512	0.90[ASN][1000 genomes]
rs537941	0.94[ASN][1000 genomes]
rs539663	0.92[ASN][1000 genomes]
rs540459	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs549281	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs551295	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs562037	0.81[EUR][1000 genomes]
rs563463	0.82[EUR][1000 genomes]
rs566264	0.82[AMR][1000 genomes]
rs566315	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs566392	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs568194	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs569015	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs569787	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs576173	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs577756	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6991592	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828175	0.88[EUR][1000 genomes]
rs7829693	0.92[EUR][1000 genomes]
rs7842147	0.89[EUR][1000 genomes]
rs9297313	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102835000-102852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:102838600-102848400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:102842200-102851000	Weak transcription	Fetal Kidney	kidney
5	chr8:102843400-102846200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:102843600-102845600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:102843800-102846000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:102843800-102846800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:102843800-102848000	Enhancers	HMEC	breast
10	chr8:102844000-102845600	Enhancers	Colon Smooth Muscle	Colon
11	chr8:102844000-102846400	Enhancers	Stomach Smooth Muscle	stomach
12	chr8:102844000-102846800	Enhancers	Fetal Muscle Leg	muscle
13	chr8:102844200-102847200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr8:102844200-102847400	Weak transcription	Esophagus	oesophagus
15	chr8:102844400-102845800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:102844400-102846000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:102844400-102846000	Weak transcription	Fetal Brain Male	brain
18	chr8:102844400-102847000	Enhancers	Psoas Muscle	Psoas
19	chr8:102844600-102849400	Weak transcription	Right Ventricle	heart
20	chr8:102845000-102845600	Enhancers	Aorta	Aorta
21	chr8:102845200-102845600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr8:102845200-102846400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:102845400-102845800	Enhancers	Brain Hippocampus Middle	brain
24	chr8:102845400-102846000	Weak transcription	Adipose Nuclei	Adipose
25	chr8:102845400-102846200	Weak transcription	Ovary	ovary
26	chr8:102845400-102846400	Weak transcription	Pancreas	Pancrea
27	chr8:102845400-102847400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:102845400-102847400	Weak transcription	NHEK	skin
29	chr8:102845400-102847800	Weak transcription	Right Atrium	heart
30	chr8:102845400-102849400	Weak transcription	Fetal Heart	heart
31	chr8:102845400-102862000	Weak transcription	Left Ventricle	heart

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