Variant report

Variant	rs562037
Chromosome Location	chr8:102865907-102865908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102864772..102866695-chr8:102870312..102872200,2	MCF-7	breast:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1144545	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1148496	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1148497	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1148498	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs1148499	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1264865	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1264866	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs1264930	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1264942	0.84[ASN][1000 genomes]
rs1264948	0.84[EUR][1000 genomes]
rs1271946	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1272384	0.81[EUR][1000 genomes]
rs1313944	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16868555	0.85[CEU][hapmap]
rs16868698	0.85[CEU][hapmap]
rs2155938	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs2155942	0.82[CEU][hapmap]
rs2226724	0.86[CEU][hapmap]
rs35473722	0.84[ASN][1000 genomes]
rs472471	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs472638	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs472963	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs473498	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs477236	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs478069	0.81[ASN][1000 genomes]
rs478092	0.86[CEU][hapmap];0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs478189	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs478875	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs478896	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs478917	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs479041	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs479742	0.82[CEU][hapmap];0.84[CHB][hapmap];0.89[ASN][1000 genomes]
rs480570	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs480955	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs481545	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs482023	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs484657	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs485252	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs485263	0.92[EUR][1000 genomes]
rs485363	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs486196	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs487863	0.95[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs487987	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs488034	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs489973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs490032	0.86[CEU][hapmap]
rs490096	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs490125	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs494352	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs495636	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs497905	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs502334	0.90[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs505460	0.90[ASN][1000 genomes]
rs506026	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs508386	0.82[CEU][hapmap]
rs510524	0.81[CEU][hapmap];0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs512202	0.86[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs513159	0.90[CEU][hapmap]
rs513472	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs514057	0.84[EUR][1000 genomes]
rs517868	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs519197	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs520880	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs526533	0.90[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs529684	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs531624	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs534512	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs537941	0.86[CEU][hapmap]
rs539663	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs540459	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs542208	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs544821	0.86[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs544928	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs549281	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs550281	0.95[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs551295	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs553463	0.86[ASN][1000 genomes]
rs554036	0.90[CEU][hapmap]
rs554945	0.86[CEU][hapmap]
rs557654	0.92[ASN][1000 genomes]
rs558159	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs558772	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs558985	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs561000	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561603	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs563463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs563493	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs564718	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs566264	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs566315	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs566392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs566501	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs568194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs569015	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs569787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs572692	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs576173	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs577756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs578603	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67887846	0.81[EUR][1000 genomes]
rs6984260	0.86[CEU][hapmap]
rs7813132	0.85[CEU][hapmap]
rs7827304	0.81[CEU][hapmap]
rs7827941	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102846800-102866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:102854800-102866200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:102859600-102866200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:102862400-102869600	Weak transcription	Left Ventricle	heart
6	chr8:102862600-102866000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:102862600-102866400	Weak transcription	NHEK	skin
8	chr8:102862600-102866600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:102862600-102867000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:102862600-102867600	Weak transcription	Right Ventricle	heart
11	chr8:102862600-102868600	Weak transcription	Aorta	Aorta
12	chr8:102862600-102868600	Weak transcription	Ovary	ovary
13	chr8:102862800-102876000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:102864000-102866400	Enhancers	HSMMtube	muscle
15	chr8:102864000-102867600	Enhancers	Fetal Muscle Leg	muscle
16	chr8:102864600-102867400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr8:102865000-102866000	Weak transcription	Psoas Muscle	Psoas
18	chr8:102865000-102866000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr8:102865000-102866400	Weak transcription	Lung	lung
20	chr8:102865000-102869200	Weak transcription	GM12878-XiMat	blood
21	chr8:102865800-102866400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:102865800-102866400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:102865800-102866600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:102865800-102866600	Enhancers	HUES48 Cell Line	embryonic stem cell

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