Variant report

Variant	rs7813132
Chromosome Location	chr8:102838020-102838021
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10091905	0.81[CEU][hapmap]
rs10094868	0.81[CEU][hapmap]
rs10216921	0.81[CEU][hapmap]
rs10505012	0.81[CEU][hapmap]
rs1073373	0.81[CEU][hapmap]
rs1074703	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1077500	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1077998	0.80[CEU][hapmap]
rs10808377	0.81[CEU][hapmap]
rs10808378	0.85[CEU][hapmap]
rs10808379	0.82[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955274	0.80[CEU][hapmap]
rs1111884	0.81[CEU][hapmap]
rs1111886	0.81[CEU][hapmap]
rs1144545	0.86[CEU][hapmap]
rs1148497	0.86[CEU][hapmap]
rs1148499	0.86[CEU][hapmap]
rs11782123	0.80[CEU][hapmap]
rs12334693	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs12545537	0.81[CEU][hapmap]
rs12550570	0.81[CEU][hapmap]
rs1264930	0.95[CEU][hapmap]
rs1264931	0.86[CEU][hapmap]
rs1264933	0.82[CEU][hapmap]
rs12677525	0.81[CEU][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes]
rs13251735	1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13255004	0.92[EUR][1000 genomes]
rs13268186	0.81[CEU][hapmap];0.83[ASN][1000 genomes]
rs13281055	0.80[CEU][hapmap]
rs1465167	0.85[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1557336	0.81[CEU][hapmap]
rs17406994	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1893366	0.82[CEU][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs2032121	0.81[CEU][hapmap]
rs2154652	0.81[CEU][hapmap]
rs2155938	0.95[CEU][hapmap]
rs2155939	0.86[CEU][hapmap]
rs2155940	0.86[CEU][hapmap]
rs2155941	0.86[CEU][hapmap]
rs2155942	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2155943	0.95[EUR][1000 genomes]
rs2186392	0.81[CEU][hapmap]
rs2186393	0.81[CEU][hapmap]
rs2212701	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2226724	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs2226725	0.91[EUR][1000 genomes]
rs2387616	0.81[CEU][hapmap]
rs2387618	0.81[CEU][hapmap]
rs2387619	0.81[CEU][hapmap]
rs28837777	0.81[EUR][1000 genomes]
rs2892324	0.83[CEU][hapmap]
rs4576401	0.81[EUR][1000 genomes]
rs472638	0.86[CEU][hapmap]
rs472963	0.86[CEU][hapmap]
rs4734040	0.81[CEU][hapmap]
rs4734593	0.81[CEU][hapmap]
rs4734594	0.81[CEU][hapmap]
rs4734595	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs4734596	0.82[EUR][1000 genomes]
rs4734597	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs478917	0.86[CEU][hapmap]
rs479041	0.86[CEU][hapmap]
rs480570	0.86[CEU][hapmap]
rs481545	0.86[CEU][hapmap]
rs482023	0.86[CEU][hapmap]
rs487863	0.86[CEU][hapmap]
rs488034	0.86[CEU][hapmap]
rs489973	0.86[CEU][hapmap]
rs494352	0.81[CEU][hapmap]
rs495636	0.86[CEU][hapmap]
rs513159	0.81[CEU][hapmap]
rs513472	0.86[CEU][hapmap]
rs517868	0.86[CEU][hapmap]
rs519197	0.86[CEU][hapmap]
rs520880	0.86[CEU][hapmap]
rs529684	0.86[CEU][hapmap]
rs531624	0.86[CEU][hapmap]
rs540459	0.86[CEU][hapmap]
rs549281	0.86[CEU][hapmap]
rs550281	0.86[CEU][hapmap]
rs551295	0.81[CEU][hapmap]
rs562037	0.85[CEU][hapmap]
rs563463	0.86[CEU][hapmap]
rs566315	0.86[CEU][hapmap]
rs566392	0.86[CEU][hapmap]
rs568194	0.86[CEU][hapmap]
rs569015	0.86[CEU][hapmap]
rs569787	0.84[CEU][hapmap]
rs577756	0.86[CEU][hapmap]
rs6468793	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs6468794	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs6468795	0.81[CEU][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs6468796	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs6468798	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs6468799	0.81[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs6468801	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6984260	0.95[CEU][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs6988793	0.81[CEU][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap]
rs6991592	0.86[CEU][hapmap]
rs6993577	0.92[EUR][1000 genomes]
rs6997574	0.81[CEU][hapmap]
rs7000357	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7001437	0.81[CEU][hapmap]
rs7003041	0.82[MEX][hapmap]
rs7009385	0.81[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]
rs7011941	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7012512	0.85[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs7015311	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7017754	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs7827304	0.86[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7827691	0.82[CEU][hapmap];0.90[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7827941	0.95[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7828175	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs7828516	0.86[CEU][hapmap]
rs7829693	0.86[CEU][hapmap]
rs7830291	0.81[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7835223	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7835485	0.81[CEU][hapmap]
rs7838696	0.82[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7840760	0.86[CEU][hapmap]
rs7844292	0.83[MEX][hapmap]
rs8181022	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs8181025	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9297313	0.82[CEU][hapmap]
rs9693504	0.85[CEU][hapmap]
rs9693531	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7813132	SLITRK2	trans	cerebellum	SCAN
rs7813132	NCALD	cis	parietal	SCAN
rs7813132	C8orf56	cis	parietal	SCAN
rs7813132	FOXL1	trans	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102832200-102843800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:102834800-102843800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102835000-102844400	Weak transcription	Psoas Muscle	Psoas
5	chr8:102835000-102852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:102835800-102839200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:102835800-102839400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:102836200-102844400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:102836600-102844000	Weak transcription	Fetal Heart	heart
10	chr8:102836600-102844200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:102836800-102843800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:102837200-102844000	Weak transcription	Brain Angular Gyrus	brain
13	chr8:102837800-102840200	Weak transcription	Left Ventricle	heart
14	chr8:102837800-102843800	Weak transcription	Aorta	Aorta
15	chr8:102838000-102838600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:102838000-102839200	Weak transcription	Fetal Muscle Leg	muscle

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